{
  "data": [
    {
      "@context": "https://erepo.genome.network/evrepo/api/context",
      "@id": "https://erepo.genome.network/evrepo/api/summary/classification/70f8e388-4b46-4ba3-bfb6-102e901314c8/doc/sepio/version/1.0.0",
      "assertionMethod": {
        "type": "VariantPathogenicityInterpretationGuideline"
      },
      "condition": {
        "@id": "https://api.monarchinitiative.org/api/bioentity/phenotype/MONDO:0009861",
        "id": "MONDO:0009861",
        "label": "phenylketonuria",
        "type": "GeneticCondition"
      },
      "evidenceLine": [
        {
          "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1798",
          "evidenceItem": [
            {
              "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/ei/1/1799",
              "contribution": [
                {
                  "agent": {
                    "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                    "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                    "type": "Agent"
                  },
                  "contributionDate": {
                    "date": "2020/9/12",
                    "description": "Date on which this evidence was provided"
                  },
                  "contributionRole": {
                    "@id": "https://obofoundry.org/sepio/0000156",
                    "id": "SEPIO:0000516",
                    "label": "curator role",
                    "type": "ContributoryRole"
                  },
                  "type": "Contribution"
                }
              ],
              "criterion": {
                "@id": "https://obofoundry.org/sepio/clingen/0011",
                "defaultStrength": {
                  "@id": "https://obofoundry.org/sepio/SEPIO:0000216",
                  "id": "SEPIO:0000216",
                  "label": "Pathogenic Moderate"
                },
                "id": "0011",
                "label": "PM2",
                "type": "Criterion"
              },
              "evidenceLine": [
                {
                  "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1798/1800",
                  "evidenceItem": [
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "comments": "The variant is present at an extremely low frequency with an overall allele frequency in gnomAD of 0.000003979 and a MAF of 0.00005438 (1/18390 alleles) in the East Asian population.",
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "type": "InfFromBkgrndSciKnow"
                    }
                  ],
                  "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1798/1800",
                  "type": "EvidenceLine"
                }
              ],
              "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/1/1799",
              "statementOutcome": {
                "@id": "SEPIO:0000224",
                "label": "Met"
              },
              "type": "CriterionAssessment"
            }
          ],
          "evidenceStrength": {
            "@id": "https://obofoundry.org/sepio"
          },
          "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1798",
          "type": "EvidenceLine"
        },
        {
          "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1831",
          "evidenceItem": [
            {
              "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/ei/1/1832",
              "contribution": [
                {
                  "agent": {
                    "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                    "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                    "type": "Agent"
                  },
                  "contributionDate": {
                    "date": "2020/9/12",
                    "description": "Date on which this evidence was provided"
                  },
                  "contributionRole": {
                    "@id": "https://obofoundry.org/sepio/0000156",
                    "id": "SEPIO:0000516",
                    "label": "curator role",
                    "type": "ContributoryRole"
                  },
                  "type": "Contribution"
                }
              ],
              "criterion": {
                "@id": "https://obofoundry.org/sepio/clingen/0018",
                "defaultStrength": {
                  "@id": "https://obofoundry.org/sepio/SEPIO:0000216",
                  "id": "SEPIO:0000216",
                  "label": "Pathogenic Moderate"
                },
                "id": "0018",
                "label": "PP4",
                "type": "Criterion"
              },
              "evidenceLine": [
                {
                  "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1831/1833",
                  "evidenceItem": [
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/EV000000016",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/EV000000016",
                      "traceableAuthorStatement": "https://www.ncbi.nlm.nih.gov/pubmed/10394930",
                      "type": "CuratorInference"
                    },
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/EV000000035",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/EV000000035",
                      "traceableAuthorStatement": "https://www.ncbi.nlm.nih.gov/pubmed/25894915",
                      "type": "CuratorInference"
                    }
                  ],
                  "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1831/1833",
                  "type": "EvidenceLine"
                }
              ],
              "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/1/1832",
              "statementOutcome": {
                "@id": "SEPIO:0000224",
                "label": "Met"
              },
              "type": "CriterionAssessment"
            }
          ],
          "evidenceStrength": {
            "@id": "https://obofoundry.org/sepio"
          },
          "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1831",
          "type": "EvidenceLine"
        },
        {
          "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1747",
          "evidenceItem": [
            {
              "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/ei/1/1748",
              "contribution": [
                {
                  "agent": {
                    "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                    "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                    "type": "Agent"
                  },
                  "contributionDate": {
                    "date": "2020/9/12",
                    "description": "Date on which this evidence was provided"
                  },
                  "contributionRole": {
                    "@id": "https://obofoundry.org/sepio/0000156",
                    "id": "SEPIO:0000516",
                    "label": "curator role",
                    "type": "ContributoryRole"
                  },
                  "type": "Contribution"
                }
              ],
              "criterion": {
                "@id": "https://obofoundry.org/sepio/clingen/0062",
                "defaultStrength": {
                  "@id": "https://obofoundry.org/sepio/SEPIO:0000329",
                  "id": "SEPIO:0000329",
                  "label": "Pathogenic Supporting"
                },
                "id": "0062",
                "label": "PP3",
                "type": "Criterion"
              },
              "evidenceLine": [
                {
                  "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1747/1749",
                  "evidenceItem": [
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "comments": "HSF (87.18>97.27=>11.57%), MaxEntScan (6.6>10.51=> 59.24%) and SpliceAI (0.82) agree that there is activation of a cryptic splice site near the end of exon 11. Furthermore, the activated cryptic donor site is stronger than the nearby canonical site (HSF 87, MaxEntScan 6) and SplicAI predicts loss of the canonical donor site (0.5). Overall, there is consensus for potential alteration of splicing which would cause a 5bp deletion and frameshift.",
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "type": "InfFromBkgrndSciKnow"
                    }
                  ],
                  "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1747/1749",
                  "type": "EvidenceLine"
                }
              ],
              "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/1/1748",
              "statementOutcome": {
                "@id": "SEPIO:0000224",
                "label": "Met"
              },
              "type": "CriterionAssessment"
            }
          ],
          "evidenceStrength": {
            "@id": "https://obofoundry.org/sepio"
          },
          "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1747",
          "type": "EvidenceLine"
        },
        {
          "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1651",
          "evidenceItem": [
            {
              "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/ei/1/1652",
              "contribution": [
                {
                  "agent": {
                    "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                    "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                    "type": "Agent"
                  },
                  "contributionDate": {
                    "date": "2020/9/12",
                    "description": "Date on which this evidence was provided"
                  },
                  "contributionRole": {
                    "@id": "https://obofoundry.org/sepio/0000156",
                    "id": "SEPIO:0000516",
                    "label": "curator role",
                    "type": "ContributoryRole"
                  },
                  "type": "Contribution"
                }
              ],
              "criterion": {
                "@id": "https://obofoundry.org/sepio/clingen/0058",
                "defaultStrength": {
                  "@id": "https://obofoundry.org/sepio/SEPIO:0000330",
                  "id": "SEPIO:0000330",
                  "label": "Pathogenic Strong"
                },
                "id": "0058",
                "label": "PM3",
                "type": "Criterion"
              },
              "evidenceLine": [
                {
                  "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1651/1653",
                  "evidenceItem": [
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/EV000000297",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/EV000000297",
                      "traceableAuthorStatement": "https://www.ncbi.nlm.nih.gov/pubmed/28982351",
                      "type": "CuratorInference"
                    }
                  ],
                  "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1651/1653",
                  "type": "EvidenceLine"
                }
              ],
              "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/1/1652",
              "statementOutcome": {
                "@id": "SEPIO:0000224",
                "label": "Met"
              },
              "type": "CriterionAssessment"
            }
          ],
          "evidenceStrength": {
            "@id": "https://obofoundry.org/sepio"
          },
          "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1651",
          "type": "EvidenceLine"
        },
        {
          "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1780",
          "evidenceItem": [
            {
              "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/ei/1/1781",
              "contribution": [
                {
                  "agent": {
                    "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                    "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                    "type": "Agent"
                  },
                  "contributionDate": {
                    "date": "2020/9/12",
                    "description": "Date on which this evidence was provided"
                  },
                  "contributionRole": {
                    "@id": "https://obofoundry.org/sepio/0000156",
                    "id": "SEPIO:0000516",
                    "label": "curator role",
                    "type": "ContributoryRole"
                  },
                  "type": "Contribution"
                }
              ],
              "criterion": {
                "@id": "https://obofoundry.org/sepio/clingen/008",
                "defaultStrength": {
                  "@id": "https://obofoundry.org/sepio/SEPIO:0000216",
                  "id": "SEPIO:0000216",
                  "label": "Pathogenic Moderate"
                },
                "id": "008",
                "label": "PM5",
                "type": "Criterion"
              },
              "evidenceLine": [
                {
                  "@id": "https://erepo.genome.network/evrepo/api/interpretation/CA229376/MONDO:0009861/006/el/0/1780/1782",
                  "evidenceItem": [
                    {
                      "@id": "CG-PCER:curatorInference/CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "contribution": [
                        {
                          "agent": {
                            "@id": "https://erepo.genome.network/evrepo/api//agent/CG_50015_EP155190578201949",
                            "id": "CG-PCER-AGENT:CG_50015_EP155190578201949",
                            "type": "Agent"
                          },
                          "comments": "At same codon as c.1194A>C (p.K398N) curated as VUS by ClinGen PAH VCEP",
                          "contributionDate": {
                            "date": "2020/9/12",
                            "description": "Date on which this evidence was provided"
                          },
                          "contributionRole": {
                            "@id": "https://obofoundry.org/sepio/0000156",
                            "id": "SEPIO:0000516",
                            "label": "curator role",
                            "type": "ContributoryRole"
                          },
                          "type": "Contribution"
                        }
                      ],
                      "id": "CA229376/MONDO:0009861/006/ci/CA229376/MONDO:0009861/006.002",
                      "type": "InfFromBkgrndSciKnow"
                    }
                  ],
                  "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1780/1782",
                  "type": "EvidenceLine"
                }
              ],
              "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/1/1781",
              "statementOutcome": {
                "@id": "SEPIO:0000224",
                "label": "Not Met"
              },
              "type": "CriterionAssessment"
            }
          ],
          "evidenceStrength": {
            "@id": "https://obofoundry.org/sepio"
          },
          "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006/0/1780",
          "type": "EvidenceLine"
        }
      ],
      "id": "CG-PCER-VARINT:CA229376/MONDO:0009861/006",
      "metadata": {
        "created": "2024-09-27T21:12:44.847Z",
        "note": "DISCLAIMER: While the data/content in this document is approved by ClinGen expert panel(s), the SEPIO schema presented here is an initial prototype and has not been reviewed nor finalized by the ClinGen Data Exchange Modeling Team. We expect it to differ significantly from the final schema.",
        "producedAtUTC": "Fri, 27 Sep 2024 21:12:44 -0000",
        "schemaLabel": "Evidence Repository.Beta-1 (Unofficial)",
        "version": "1.0.0"
      },
      "statementOutcome": {
        "@id": "https://loinc.org/LA26332-9",
        "id": "LN:LA26332-9",
        "label": "Likely Pathogenic"
      },
      "type": "VariantPathogenicityInterpretation",
      "uuid": "70f8e388-4b46-4ba3-bfb6-102e901314c8",
      "variant": {
        "@id": "https://reg.genome.network/allele/CA229376",
        "id": "CAR:CA229376",
        "relatedContextualAllele": [
          {
            "alleleName": [
              {
                "name": "NM_000277.3:c.1194A>G"
              }
            ],
            "preferred": true
          }
        ],
        "relatedIdentifier": [
          {
            "label": "NM_000277.3(PAH):c.1194A>G (p.Lys398=)"
          }
        ],
        "type": "CAR"
      }
    }
  ],
  "metadata": {
    "rendered": {
      "by": "https://erepo.genome.network/evrepo/api/summary/srvc",
      "when": "2026-04-04T23:18:05.632Z"
    }
  },
  "status": {
    "code": 200,
    "name": "OK"
  }
}