The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000174.5:c.285T>G

CA354447939

Gene: GP9 (HGNC:2815)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: 09748d83-e5e5-4c8b-aaaa-0fd3995d25c7
Approved on: 2025-11-06
Published on: 2025-11-07

HGVS expressions

NM_000174.5:c.285T>G
NC_000003.12:g.129062024T>G
CM000665.2:g.129062024T>G
NC_000003.11:g.128780867T>G
CM000665.1:g.128780867T>G
NC_000003.10:g.130263557T>G
NG_008715.1:g.6223T>G
ENST00000307395.5:c.285T>G
ENST00000307395.4:c.285T>G
NM_000174.4:c.285T>G
More

Likely Pathogenic

Met criteria codes 4
PP4 PVS1_Strong PM3_Supporting PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP9 Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.285T>G (p.Tyr95Ter) variant in GP9 is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong). At least one patient (Patient BSS15.01 in PMID: 23995613) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1_Strong, PP4, PM3_Supporting, and PM2_Supporting (VCEP specifications version 1).
Met criteria codes
PP4
At least one patient (Patient BSS15.01 in PMID: 23995613) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4).
PVS1_Strong
The c.285T>G (p.Tyr95Ter) variant in GP9 is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong).
PM3_Supporting
This variant has been detected in at least 1 proband with Bernard-Soulier syndrome (PMID: 23995613). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting).
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
Curation History
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