The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_001354803.2:c.122A>G

CA367399062

3383915 (ClinVar)

Gene: GCK (HGNC:2645)
Condition: monogenic diabetes (MONDO:0015967)
Inheritance Mode: Semidominant inheritance
UUID: 25d4e611-dd25-493a-9da0-eef2a541dd19
Approved on: 2025-09-19
Published on: 2025-09-19

HGVS expressions

NM_001354803.2:c.122A>G
NC_000007.14:g.44145662T>C
CM000669.2:g.44145662T>C
NC_000007.13:g.44185261T>C
CM000669.1:g.44185261T>C
NC_000007.12:g.44151786T>C
NG_008847.1:g.48762A>G
NG_008847.2:g.57509A>G
ENST00000395796.8:c.*1086A>G
ENST00000616242.5:c.*208A>G
ENST00000683378.1:n.314A>G
ENST00000336642.9:c.122A>G
ENST00000345378.7:c.1091A>G
ENST00000403799.8:c.1088A>G
ENST00000671824.1:c.1151A>G
ENST00000672743.1:n.100A>G
ENST00000673284.1:c.1088A>G
ENST00000336642.8:c.140A>G
ENST00000345378.6:c.1091A>G
ENST00000395796.7:c.1085A>G
ENST00000403799.7:c.1088A>G
ENST00000437084.1:c.1037A>G
ENST00000459642.1:n.468A>G
ENST00000473353.1:n.386A>G
ENST00000616242.4:c.1085A>G
NM_000162.3:c.1088A>G
NM_033507.1:c.1091A>G
NM_033508.1:c.1085A>G
NM_000162.4:c.1088A>G
NM_001354800.1:c.1088A>G
NM_001354801.1:c.77A>G
NM_001354802.1:c.-53A>G
NM_001354803.1:c.122A>G
NM_033507.2:c.1091A>G
NM_033508.2:c.1085A>G
NM_000162.5:c.1088A>G
NM_033507.3:c.1091A>G
NM_033508.3:c.1085A>G
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Pathogenic

Met criteria codes 6
PP1_Strong PP3 PP2 PS4_Moderate PM2_Supporting PP4_Moderate

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GCK Version 3.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.1088A>G variant in the glucokinase gene, GCK, causes an amino acid change of aspartic acid to glycine at codon 363 (p.(Asp363Gly)) of NM_000162.5. This variant is predicted to be deleterious by computational evidence, with a REVEL score of 0.937, which is greater than the MDEP VCEP threshold of 0.70 (PP3). GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease (PP2). This variant is absent from gnomAD v4.1.0(PM2_Supporting). This variant was identified in an individual with a clinical history highly specific for GCK-MODY (fasting glucose 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and three-generation, dominant family history of diabetes (in a family not used for PP1)) (PP4_Moderate; internal lab contributors). This variant segregated with hyperglycemia, with 4 informative meioses in 2 families (PP1_Strong; internal lab contributors). This variant was identified in four unrelated individuals with hyperglycemia (PS4_Moderate; PMID: 37045781, internal lab contributors). In summary, c.1088A>G meets the criteria to be classified as pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 3.0.0, approved 7/23/2025): PS4_Moderate, PP4_Moderate, PP1_Strong, PM2_Supporting, PP2, PP3.
Met criteria codes
PP1_Strong
This variant segregated with hyperglycemia, with 4 informative meioses in 2 families (PP1_Strong; PMID: 37045781, internal lab contributors).
PP3
This variant is predicted to be deleterious by computational evidence, with a REVEL score of 0.937, which is greater than the MDEP VCEP threshold of 0.70.
PP2
GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease.
PS4_Moderate
This variant was identified in four unrelated individuals with hyperglycemia (PS4_Moderate; PMID: 37045781, internal lab contributors).
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
PP4_Moderate
This variant was identified in an individual with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and three-generation, dominant family history of diabetes (in a family not used for PP1) (PP4_Moderate; internal lab contributor).
Curation History
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