The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene label mismatch: VWF vs undefined
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000552.5(VWF):c.3569G>T (p.Cys1190Phe)

CA383510973

2572159 (ClinVar)

Gene: VWF (HGNC:7450)
Condition: von Willebrand disease type 2A (MONDO:0015628)
Inheritance Mode: Autosomal dominant inheritance
UUID: 382a0334-162b-4fa9-87f7-d77a6aea64cb
Approved on: 2025-04-02
Published on: 2025-04-02

HGVS expressions

NM_000552.5(VWF):c.3569G>T (p.Cys1190Phe)
NM_000552.5:c.3569G>T
NC_000012.12:g.6022005C>A
CM000674.2:g.6022005C>A
NC_000012.11:g.6131171C>A
CM000674.1:g.6131171C>A
NC_000012.10:g.6001432C>A
NG_009072.1:g.107666G>T
NG_009072.2:g.107666G>T
ENST00000261405.10:c.3569G>T
ENST00000261405.9:c.3569G>T
ENST00000538635.5:n.421-28071G>T
NM_000552.3:c.3569G>T
NM_000552.4:c.3569G>T
More

Likely Pathogenic

Met criteria codes 4
PP4_Moderate PP3 PM5 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen von Willebrand Disease Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for VWF Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
von Willebrand Disease VCEP
The NM_000552.5:c.3569G>T variant in VWF is a missense variant predicted to cause substitution of cysteine by phenylalanine at amino acid 1190. At least 1 patient with this variant displayed excessive mucocutaneous bleeding (evidenced by inclusion in a VWD diagnosed cohort) as well as laboratory phenotypes of very low VWF activity VWF:GP1b and VWF:Collagen binding assay, low activity/VWF:Ag ratio, and loss of high molecular weight multimers, which together are highly specific for VWD type 2A. (PP4_moderate, PMID 36299619). Another missense variant NM_000552.5:c.3568T>C (p.Cys1190Arg) in the same codon has been classified as likely pathogenic for VWD type 2A by the ClinGen VWD VCEP (PM5). The computational predictor REVEL gives a score of 0.955, which is above the ClinGen VWD VCEP threshold of >0.644 and predicts a damaging effect on VWF function (PP3). The computational predictor REVEL gives a score of 0.955, which is above the ClinGen VWD VCEP threshold of >0.644 and predicts a damaging effect on VWF function (PP3). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal dominant VWD type 2A based on the ACMG/AMP criteria applied, as specified by the ClinGen VWD VCEP: PS4_Supporting, PM5_Supporting, PP3, PM2_Supporting. (ClinGen von Willebrand Disease Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for VWF Version 1.0.0; date of approval)
Met criteria codes
PP4_Moderate
At least 1 patient with this variant displayed excessive mucocutaneous bleeding (evidenced by inclusion in a VWD diagnosed cohort) as well as laboratory phenotypes of very low VWF activity VWF:GP1b and VWF:Collagen binding assay, low activity/VWF:Ag ratio, and loss of high molecular weight multimers, which together are highly specific for VWD type 2A. (PP4_moderate, PMID 36299619).
PP3
The computational predictor REVEL gives a score of 0.955, which is above the ClinGen VWD VCEP threshold of >0.644 and predicts a damaging effect on VWF function (PP3).
PM5
Another missense variant NM_000552.5:c.3568T>C (p.Cys1190Arg) in the same codon has been classified as pathogenic for VWD type 2A by the ClinGen VWD VCEP (PM5).
PM2_Supporting
This variant is absent from gnomAD v4.1 (PM2_Supporting).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
ClinGen Terms of Use.
¤ Powered by BCM's Genboree.