The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000059.4(BRCA2):c.7787G>T (p.Gly2596Val)

CA387746014

483092 (ClinVar)

Gene: BRCA2 (HGNC:675)
Condition: BRCA2-related cancer predisposition (MONDO:0700269)
Inheritance Mode: Autosomal dominant inheritance
UUID: 3b78f2f4-c9a2-4f6c-a699-d8b0931557ed
Approved on: 2026-07-24
Published on: 2026-07-24

HGVS expressions

NM_000059.4(BRCA2):c.7787G>T (p.Gly2596Val)
NM_000059.4:c.7787G>T
NC_000013.11:g.32357911G>T
CM000675.2:g.32357911G>T
NC_000013.10:g.32932048G>T
CM000675.1:g.32932048G>T
NC_000013.9:g.31830048G>T
NG_012772.3:g.47432G>T
ENST00000470094.2:c.7787G>T
ENST00000528762.2:c.7787G>T
ENST00000530893.7:c.7418G>T
ENST00000665585.2:c.7787G>T
ENST00000666593.2:c.7787G>T
ENST00000700202.2:c.7787G>T
ENST00000700202.1:c.254G>T
ENST00000380152.8:c.7787G>T
ENST00000544455.6:c.7787G>T
ENST00000614259.2:c.7787G>T
ENST00000665585.1:c.352G>T
ENST00000680887.1:c.7787G>T
ENST00000380152.7:c.7787G>T
ENST00000544455.5:c.7787G>T
ENST00000614259.1:n.7787G>T
NM_000059.3:c.7787G>T
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Pathogenic

Met criteria codes 4
PM2_Supporting PP4_Strong PS3 PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen ENIGMA BRCA1 and BRCA2 Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for BRCA2 Version 1.2

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
ENIGMA BRCA1 and BRCA2 VCEP
The c.7787G>T variant in BRCA2 is a missense variant predicted to cause substitution of Glycine by Valine at amino acid 2596 (p.(Gly2596Val)). This variant is absent from gnomAD v4.1 (read depth ≥25x in >90% samples, PM2_Supporting met). This BRCA2 missense variant is within a key functional domain and the computational predictor BayesDel (noAF) gives a score of 0.45, above the recommended threshold of 0.30 for prediction of impact on BRCA2 function via protein change. A SpliceAI score of 0.15 indicates an unclear predicted impact on splicing (score threshold 0.10-0.20) (PP3 met). Reported by three calibrated studies to exhibit protein function similar to pathogenic control variants (PMIDs: 38417439, 39779857, 39779848) (PS3 met). Multifactorial likelihood ratio analysis using clinically calibrated data produced a combined LR for this variant of 2273.3 (based on Cosegregation LR=1733.4; Pathology LR=4.86; Family History LR=0.27), above the thresholds for very strong evidence towards pathogenicity (LR >350) (PP4_Very strong met; PMID: 34597585, 31131967, Internal lab contributor). In summary, this variant meets the criteria to be classified as a Pathogenic variant for BRCA2-related cancer predisposition based on the ACMG/AMP criteria applied as specified by the ENIGMA BRCA1/2 VCEP (PM2_Supporting, PP3, PS3, PP4_Very strong).
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v4.1 (read depth ≥25x in >90% samples, PM2_Supporting met).
PP4_Strong
at Very strong level: Multifactorial likelihood ratio analysis using clinically calibrated data produced a combined LR for this variant of 2273.3 (based on Cosegregation LR=1733.4; Pathology LR=4.86; Family History LR=0.27), above the thresholds for very strong evidence towards pathogenicity (LR >350) (PP4_Very strong met; PMID: 34597585, 31131967, Internal lab contributor).
PS3
Reported by three calibrated studies to exhibit protein function similar to pathogenic control variants (PMIDs: 38417439, 39779857, 39779848) (PS3 met).
PP3
This BRCA2 missense variant is within a key functional domain and the computational predictor BayesDel (noAF) gives a score of 0.45, above the recommended threshold of 0.30 for prediction of impact on BRCA2 function via protein change. A SpliceAI score of 0.15 indicates an unclear predicted impact on splicing (score threshold 0.10-0.20) (PP3 met).
Curation History
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