The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000033.4(ABCD1):c.1631A>G (p.Gln544Arg)

CA415112066

837244 (ClinVar)

Gene: ABCD1 (HGNC:215)
Condition: adrenoleukodystrophy (MONDO:0018544)
Inheritance Mode: X-linked inheritance
UUID: 5e83d125-f8d0-4cb7-aabe-5c099d6f1643
Approved on: 2026-04-17
Published on: 2026-04-17

HGVS expressions

NM_000033.4(ABCD1):c.1631A>G (p.Gln544Arg)
NM_000033.4:c.1631A>G
NC_000023.11:g.153740234A>G
CM000685.2:g.153740234A>G
NC_000023.10:g.153005688A>G
CM000685.1:g.153005688A>G
NC_000023.9:g.152658882A>G
NG_009022.2:g.20367A>G
ENST00000218104.6:c.1631A>G
ENST00000218104.5:c.1631A>G
ENST00000443684.2:n.634A>G
NM_000033.3:c.1631A>G
More

Likely Pathogenic

Met criteria codes 5
PM2_Supporting PS3_Supporting PS4 PP4 PP3
Not Met criteria codes 1
BS3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Peroxisomal Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for ABCD1 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Peroxisomal Disorders VCEP
The c.1631A>G (p.Gln544Arg) variant in ABCD1 is a missense variant predicted to cause substitution of glutamine by arginine at amino acid 544 (p.Gln544Arg). At least one patient with this variant displayed rapid progression of inflammatory white matter demyelination in childhood and abnormal very long chain fatty acid testing, which is highly specific for adrenoleukodystrophy (PP4, PMID:10190819). This variant has been reported in 5 additional probands meeting PP4 phenotype criteria (PS4; PMIDs 21068741, 32632637, 10190819, 20661612). This variant is absent from gnomAD v2.1.1, v3.1.2 and v4.1.0 (PM2_Supporting). Beta-oxidation assay in X-ALD fibroblasts (163T) showed that the beta-oxidation activity of the variant protein is approximately 1.6% of wild type ABCD1, indicating that this variant has impact protein function (PMID:17542813)(PS3_Supporting). The computational predictor REVEL gives a score of 0.958, which is above the threshold of 0.85, evidence that correlates with impact to ABCD1 function (PP3). In summary, this variant meets the criteria to be classified as likely pathogenic for X-linked adrenoleukodystrophy based on the ACMG/AMP criteria applied, as specified by the ClinGen Peroxisomal Disorders VCEP: PS3_Supporting, PP4, PS4, PM2_Supporting, PP3 (ClinGen Peroxisomal Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for ABCD1 Version 1.0.0)
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v2.1.1, v3.1.2 and v4.1.0 (PM2_Supporting).
PS3_Supporting
Beta-oxidation assay in X-ALD fibroblasts (163T) showed that the beta-oxidation activity of the variant protein is approximately 1.6% of wild type ABCD1, indicating that this variant has impact protein function (PMID:17542813)(PS3_Supporting).
PS4
This variant has been reported in 5 additional probands meeting PP4 phenotype criteria (PS4; PMIDs 21068741, 32632637, 10190819, 20661612).
PP4
At least one patient with this variant displayed rapid progression of inflammatory white matter demyelination in childhood and abnormal very long chain fatty acid testing, which is highly specific for adrenoleukodystrophy (PP4, PMID:10190819).
PP3
The computational predictor REVEL gives a score of 0.958, which is above the threshold of 0.85, evidence that correlates with impact to ABCD1 function (PP3).
Not Met criteria codes
BS3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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