The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000407.5(GP1BB):c.137G>A (p.Trp46Ter)

CA126158

16040 (ClinVar)

Gene: GP1BB (HGNC:2812)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: 6b23fc30-f291-4c71-a346-1f6c605ebfe4
Approved on: 2026-01-20
Published on: 2026-01-20

HGVS expressions

NM_000407.5:c.137G>A
NM_000407.5(GP1BB):c.137G>A (p.Trp46Ter)
NC_000022.11:g.19723980G>A
CM000684.2:g.19723980G>A
NC_000022.10:g.19711503G>A
CM000684.1:g.19711503G>A
NC_000022.9:g.18091503G>A
NG_007974.1:g.5438G>A
ENST00000366425.4:c.137G>A
ENST00000366425.3:c.137G>A
ENST00000431044.5:c.*1222G>A
ENST00000455843.5:c.*1222G>A
ENST00000470814.1:n.2109G>A
NM_000407.4:c.137G>A
NR_037611.1:n.3877G>A
NR_037612.1:n.2381G>A
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Likely Pathogenic

Met criteria codes 4
PVS1_Strong PM3_Supporting PP4 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP1BB Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.137G>A (p.Trp46Ter) variant in GP1BB is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong). At least one patient (Patient 1 in PMID: 10887115) with this variant had aggregation absent for ristocetin and present for all other agonists and less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding which is consistent with Bernard-Soulier syndrome (PP4). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting). The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.00001886 (based on 29/1146916 alleles) in the European (non-Finnish) population, which is lower than the ClinGen PD VCEP threshold (<0.00006517; PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1_Strong, PP4, PM3_Supporting and PM2_Supporting (VCEP specifications version 1).
Met criteria codes
PVS1_Strong
The c.137G>A (p.Trp46Ter) variant in GP1BB is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong).
PM3_Supporting
This variant has been detected in at least 1 proband with Bernard-Soulier syndrome (PMID: 10887115). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting).
PP4
At least one patient (Patient 1 in PMID: 10887115) with this variant had aggregation absent for ristocetin and present for all other agonists and less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding which is consistent with Bernard-Soulier syndrome (PP4).
PM2_Supporting
The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.00001886 (based on 29/1146916 alleles) in the European (non-Finnish) population, which is lower than the ClinGen PD VCEP threshold (<0.00006517; PM2_Supporting).
Curation History
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