The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene label mismatch: ANO5 vs undefined
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_213599.3(ANO5):c.108_109del (p.Glu36fs)

CA10606240

288833 (ClinVar)

Gene: ANO5 (HGNC:203859)
Condition: autosomal recessive limb-girdle muscular dystrophy (MONDO:0015152)
Inheritance Mode: Autosomal recessive inheritance
UUID: 6f0d42f5-587e-4b7c-a76d-9a83877e909a
Approved on: 2025-06-24
Published on: 2025-07-08

HGVS expressions

NM_213599.3(ANO5):c.108_109del (p.Glu36fs)
NM_213599.3:c.108_109del
NC_000011.10:g.22211284_22211285del
CM000673.2:g.22211284_22211285del
NC_000011.9:g.22232830_22232831del
CM000673.1:g.22232830_22232831del
NC_000011.8:g.22189406_22189407del
NG_015844.1:g.23109_23110del
ENST00000682084.1:n.3282_3283del
ENST00000682266.1:c.-301_-300del
ENST00000682341.1:c.108_109del
ENST00000682530.1:c.105_106del
ENST00000682684.1:n.529_530del
ENST00000683197.1:c.108_109del
ENST00000683411.1:c.-362_-361del
ENST00000683437.1:c.-270-9813_-270-9812del
ENST00000683834.1:n.350_351del
ENST00000683897.1:n.394_395del
ENST00000684365.1:n.519_520del
ENST00000684663.1:c.105_106del
ENST00000324559.9:c.108_109del
ENST00000648804.1:n.639_640del
ENST00000324559.8:c.108_109del
NM_001142649.1:c.105_106del
NM_213599.2:c.108_109del
NM_001142649.2:c.105_106del
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Pathogenic

Met criteria codes 4
PVS1 PM3_Supporting PP4 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Limb Girdle Muscular Dystrophy Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for ANO5 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Limb Girdle Muscular Dystrophy VCEP
The NM_213599.3: c.108_109del p.(Glu36AspfsTer7) variant in ANO5 is a frameshift variant predicted to cause a premature stop codon in biologically relevant exon 3/22, leading to nonsense mediated decay in a gene in which loss of function is an established disease mechanism (PVS1). This variant has been identified in at least two patients with features consistent with ANO5-related muscle disease (PMID: 32367299, 39666917, 30564623; LOVD Individuals #00460288, #00221640), including in unknown phase with a pathogenic ANO5 variant in one patient with hyperCKemia, signs of myopathy on EMG, mitochondrial signs on muscle biopsy, and typical changes on muscle MRI (c.191dup p.(Asn64LysfsTer15), 0.5 pts, PMID: 32367299, 39666917; LOVD Individual #00460288) (PM3_Supporting). At least one patient reported with this variant and a second presumed diagnostic ANO5 variant had a clinical suspicion of LGMD (PMID: 30564623; LOVD Individual #00221640) (PP4). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as Pathogenic for autosomal recessive limb girdle muscular dystrophy based on the ACMG/AMP criteria applied, as specified by the ClinGen LGMD VCEP (LGMD VCEP specifications version 1.0.0; 06/24/2025): PVS1, PM3_Supporting, PP4, PM2_Supporting.
Met criteria codes
PVS1
The NM_213599.3: c.108_109del p.(Glu36AspfsTer7) variant in ANO5 is a frameshift variant predicted to cause a premature stop codon in biologically relevant exon 3/22, leading to nonsense mediated decay in a gene in which loss of function is an established disease mechanism (PVS1).
PM3_Supporting
This variant has been identified in at least two patients with features consistent with ANO5-related muscle disease (PMID: 32367299, 39666917, 30564623; LOVD Individuals #00460288, #00221640), including in unknown phase with a pathogenic ANO5 variant in one patient with hyperCKemia, signs of myopathy on EMG, mitochondrial signs on muscle biopsy, and typical changes on muscle MRI (c.191dup p.(Asn64LysfsTer15), 0.5 pts, PMID: 32367299, 39666917; LOVD Individual #00460288) (PM3_Supporting). Cannot check co-occurrence data since variant under curation is absent from gnomAD.
PP4
At least one patient reported with this variant and a second presumed diagnostic ANO5 variant had a clinical suspicion of LGMD (PMID: 30564623; LOVD Individual #00221640) (PP4).
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
Curation History
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