The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • Despite there being a valid 'cspec' property in the messages there's a discrepancy in message contents and CSPEC data: * Message Gene: RYR1 CSPEC Genes: [ 'RYR1' ] * Message MONDOs: MONDO:0007783 CSPEC MONDO: [ 'MONDO:0018493' ]
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000540.2(RYR1):c.11958C>G (p.Asp3986Glu)

CA023951

133026 (ClinVar)

Gene: RYR1 (HGNC:6261)
Condition: malignant hyperthermia, susceptibility to, 1 (MONDO:0007783)
Inheritance Mode: Autosomal dominant inheritance
UUID: 71a97107-eb35-424a-b0bd-22b0f158fe29
Approved on: 2026-03-03
Published on: 2026-03-03

HGVS expressions

NM_000540.2(RYR1):c.11958C>G (p.Asp3986Glu)
NM_000540.2:c.11958C>G
NC_000019.10:g.38543821C>G
CM000681.2:g.38543821C>G
NC_000019.9:g.39034461C>G
CM000681.1:g.39034461C>G
NC_000019.8:g.43726301C>G
NG_008866.1:g.115122C>G
ENST00000688602.1:c.368C>G
ENST00000689936.1:c.350C>G
ENST00000359596.8:c.11958C>G
ENST00000355481.8:c.11943C>G
ENST00000359596.7:c.11958C>G
ENST00000360985.7:c.11940C>G
ENST00000593322.1:c.567C>G
ENST00000594335.5:c.5327C>G
NM_001042723.1:c.11943C>G
NM_000540.3:c.11958C>G
NM_001042723.2:c.11943C>G
More

Likely Pathogenic

Met criteria codes 3
PP1_Strong BS3_Supporting PS4
Not Met criteria codes 5
BS1 BP4 BA1 PM1 PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Malignant Hyperthermia Susceptibility Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for RYR1 Version 2

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of aspartic acid with glutamic acid at codon 3986 of the RYR1 protein, p.(Asp3986Glu). This variant is not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in ten unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:30236257; PMID:23558838). Functional studies in HEK293 cells do not show an increased sensitivity to RYR1 agonists, BS3_Supporting (PMID: 28403410). This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. This variant segregates with MHS in seven individuals/families, PP1_Strong (PMID:28403410, UK (Leeds) MH Unit). A REVEL score of 0.763 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Likely Pathogenic. Criteria implemented: PS4, PP1_Strong, BS3_Supporting.
Met criteria codes
PP1_Strong
This variant segregates with MHS in seven individuals/families, PP1_Supporting ( PMID:28403410, UK (Leeds) MH Unit).
BS3_Supporting
Functional studies in HEK293 cells do not show an increased sensitivity to RYR1 agonists, BS3_Supporting (PMID: 28403410).
PS4
This variant has been reported in ten unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:30236257; PMID:23558838).
Not Met criteria codes
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
A REVEL score of 0.763 supports neither a pathogenic nor a benign status for this variant.
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
PP3
A REVEL score of 0.763 supports neither a pathogenic nor a benign status for this variant.
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
ClinGen Terms of Use.
¤ Powered by BCM's Genboree.