The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000173.7:c.882C>G

CA397319104

Gene: GP1BA (HGNC:2811)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: 7cda8b81-50ce-4788-9fba-d12bd08dd8de
Approved on: 2025-11-06
Published on: 2025-11-07

HGVS expressions

NM_000173.7:c.882C>G
NC_000017.11:g.4933486C>G
CM000679.2:g.4933486C>G
NC_000017.10:g.4836781C>G
CM000679.1:g.4836781C>G
NC_000017.9:g.4777561C>G
NG_008767.2:g.6192C>G
ENST00000329125.6:c.882C>G
ENST00000649830.1:c.-888+856G>C
ENST00000329125.5:c.882C>G
ENST00000611961.1:c.882C>G
NM_000173.6:c.882C>G
More

Likely Pathogenic

Met criteria codes 4
PM3_Supporting PM2_Supporting PP4 PVS1_Strong

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP1BA Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.882C>G (p.Tyr294Ter) variant in GP1BA is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong). At least one patient (Patient V in PMID:22672365) with this variant had less than 10% expression of GPIba measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting). The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.00000553 (based on 2/60024 alleles) in the Admixed American population, which is lower than the ClinGen PD VCEP threshold (<0.0001114; PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1_Strong, PP4, PM3_Supporting and PM2_Supporting (VCEP specifications version 1).
Met criteria codes
PM3_Supporting
This variant has been detected in at least 1 proband with Bernard-Soulier syndrome. This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting).
PM2_Supporting
The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.00000553 (based on 2/60024 alleles) in the Admixed American population, which is lower than the ClinGen PD VCEP threshold (<0.0001114; PM2_Supporting).
PP4
At least one patient (Patient V in PMID:22672365) with this variant had less than 10% expression of GPIba measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4).
PVS1_Strong
The c.882C>G (p.Tyr294Ter) variant in GP1BA is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
ClinGen Terms of Use.
¤ Powered by BCM's Genboree.