The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • No CSPEC related information was provided by the message!

  • No Criteria Specification was provided in the publication event for the variant classifaction.
  • The Criteria Specification shown below is a best-estimate based on the VCEP, gene, disease, and publication date.

Variant: NM_000212.3:c.118C>T

CA400031679

Gene: ITGB3 (HGNC:3690)
Condition: Glanzmann thrombasthenia (MONDO:0100326)
Inheritance Mode: Autosomal recessive inheritance
UUID: 8b8dc150-3ac0-4be6-90f0-e037ecfc22b1
Approved on: 2022-04-07
Published on: 2022-12-07

HGVS expressions

NM_000212.3:c.118C>T
NC_000017.11:g.47274457C>T
CM000679.2:g.47274457C>T
NC_000017.10:g.45351823C>T
CM000679.1:g.45351823C>T
NC_000017.9:g.42706822C>T
NG_008332.2:g.25616C>T
ENST00000559488.7:c.118C>T
ENST00000559488.5:c.118C>T
ENST00000560629.1:n.83C>T
ENST00000571680.1:c.118C>T
NM_000212.2:c.118C>T
More

Pathogenic

Met criteria codes 3
PVS1 PP4_Strong PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The NM_000212.3(ITGB3):c.118C>T (p.Gln40Ter) variant in exon 2/15 is a nonsense variant predicted to lead to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). At least one patient (Patient GT8 in PMID:25373348) with this variant displayed mucocutaneous bleeding and impaired aggregation with all agonists except ristocetin, which is highly specific for Glanzmann thrombasthenia. Additionally, αIIbβ3 surface expression was severely reduced, as measured by flow cytometry and Western blot. ITGA2B and ITGB3 were sequenced across all exons and intron/exon boundaries (PP4_strong). In summary this variant meets criteria to be classified as Pathogenic for autosomal recessive Glanzmann Thrombasthenia based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PP4_strong, PVS1, PM2_supporting. (VCEP specifications version 2; date of approval 02/03/2022)
Met criteria codes
PVS1
The c.118C>T (p.Gln40Ter) variant in exon 2/15 is a nonsense variant predicted to lead to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1).
PP4_Strong
At least one patient (Patient GT8 in PMID:25373348) with this variant displayed mucocutaneous bleeding and impaired aggregation with all agonists except ristocetin, which is highly specific for Glanzmann thrombasthenia. Additionally, αIIbβ3 surface expression was severely reduced, as measured by flow cytometry and Western blot. ITGA2B and ITGB3 were sequenced across all exons and intron/exon boundaries (PP4_strong).
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
Curation History
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