The NM_000350.3:c.4924_4927del (p.Ser1642fs) variant in ABCA4 is a frameshift variant predicted to cause a premature stop codon in biologically relevant exon 35/50 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1). The total minor allele frequency in gnomAD v4.1.0 is 0.000001239 (2/1614206 alleles), which is lower than the ClinGen ABCA4 VCEP’s threshold for PM2_Supporting (<0.0001). The prevalence of the variant in affected individuals is not significantly increased compared with the prevalence in controls with an OR of infinity and the CI is 0.31-infinity, which is above the ABCA4 VCEP threshold of ≥5, but the CI does contain 1 (PMID: 35120629). This variant has been detected in at least 1 individual with ABCA4-related retinopathy who was homozygous for the variant (PM3_Supporting; ClinVar SCV: SCV005415477.1). The variant has been reported to segregate with ABCA4-related retinopathy in the proband and 2 similarly affected relatives (PP1_Moderate; ClinVar SCV: SCV005415477.1). In summary, this variant meets the criteria to be classified as pathogenic for ABCA4-related retinopathy based on the ACMG/AMP criteria applied, as specified by the ClinGen ABCA4 VCEP (Specification Version 1.0): PVS1, PM3_Supporting, PM2_Supporting, PP1_Moderate.