The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000407.5(GP1BB):c.423C>A (p.Cys141Ter)

CA410677482

1324499 (ClinVar)

Gene: GP1BB (HGNC:2812)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: 994e5aca-0757-46ba-a777-2db182610bfc
Approved on: 2026-01-20
Published on: 2026-01-23

HGVS expressions

NM_000407.5:c.423C>A
NM_000407.5(GP1BB):c.423C>A (p.Cys141Ter)
NC_000022.11:g.19724266C>A
CM000684.2:g.19724266C>A
NC_000022.10:g.19711789C>A
CM000684.1:g.19711789C>A
NC_000022.9:g.18091789C>A
NG_007974.1:g.5724C>A
ENST00000366425.4:c.423C>A
ENST00000366425.3:c.423C>A
ENST00000431044.5:c.*1508C>A
NM_000407.4:c.423C>A
NR_037611.1:n.4163C>A
NR_037612.1:n.2667C>A
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Pathogenic

Met criteria codes 5
PM3 PM2_Supporting PP4 PP1_Moderate PVS1_Strong
Not Met criteria codes 1
PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP1BB Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.423C>A (p.Cys141Ter) variant in GP1BB is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong). At least one patient (Patient ID.1 in PMID: 33657022) with this variant had multiplate aggregation data showing virtually absent ristocetin agglutination in the proband and their affected sibling, which is disproportional to aggregation with other agonists. Platelet function studies in this manuscript were performed by multiplate aggregation and not light transmission aggregometry which is the gold standard. The very low platelet counts, characteristic of BSS, explain why aggregation with other agonists are decreased and not normal as specified in the rule specifications for PP4. Additionally, the patient had excessive mucocutaneous bleeding. This pattern of results unequivocally supports a diagnosis of Bernard-Soulier Syndrome. This variant has been detected in at least 2 probands with Bernard-Soulier syndrome (Patient ID.1 in PMID: 33657022, Patient 1 in PMID: 22343686). Both individuals were homozygous for the variant (1 PM3 point, PM3). The variant has been reported to segregate in the proband plus two additional homozygous BSS affected family members (PMID:33657022), 2 PP1 points, PP1_Moderate). The MAF allele frequency in gnomAD v4.1.0 is 0.00002178 (based on 1/45916 alleles) in the Remaining population, which is lower than the ClinGen PD VCEP threshold (<0.00006517; PM2_Supporting). In summary, this variant meets the criteria to be classified as Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1_Strong, PP1_Moderate, PP4, PM2_Supporting and PM3 (VCEP specifications version 1.1).
Met criteria codes
PM3
This variant has been detected in at least 2 probands with Bernard-Soulier syndrome (Patient ID.1 in PMID: 33657022, Patient 1 in PMID: 22343686). Both individuals were homozygous for the variant (1 PM3 point, PM3).
PM2_Supporting
The MAF allele frequency in gnomAD v4.1.0 is 0.00002178 (based on 1/45916 alleles) in the Remaining population, which is lower than the ClinGen PD VCEP threshold (<0.00006517; PM2_Supporting).
PP4
At least one patient (Patient ID.1 in PMID: 33657022) with this variant had multiplate aggregation data showing virtually absent ristocetin agglutination in the proband and their affected sibling, which is disproportional to aggregation with other agonists. Platelet function studies in this manuscript were performed by multiplate aggregation and not light transmission aggregometry which is the gold standard. The very low platelet counts, characteristic of BSS, explain why aggregation with other agonists are decreased and not normal as specified in the rule specifications for PP4. Additionally, the patient had excessive mucocutaneous bleeding. This pattern of results unequivocally supports a diagnosis of Bernard-Soulier Syndrome.
PP1_Moderate
The variant has been reported to segregate in the proband plus two additional homozygous BSS affected family members (PMID:33657022), 2 PP1 points, PP1_Moderate).
PVS1_Strong
The c.423C>A (p.Cys141Ter) variant in GP1BB is a nonsense variant that may cause loss of function of the protein, however it is predicted to escape nonsense mediated decay and remove >10% of the protein (PVS1_Strong).
Not Met criteria codes
PS4
One individual is heterozygous for the variant and is considered informative due to presenting with macrothrombocytopenia. (PMID 36173017; 0.25 PS4 points).
Curation History
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