The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000407.5:c.265A>G

CA410676935

Gene: GP1BB (HGNC:2812)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: 9b218336-0c1d-46a1-a748-0f0ef9dd921b
Approved on: 2026-04-02
Published on: 2026-04-02

HGVS expressions

NM_000407.5:c.265A>G
NC_000022.11:g.19724108A>G
CM000684.2:g.19724108A>G
NC_000022.10:g.19711631A>G
CM000684.1:g.19711631A>G
NC_000022.9:g.18091631A>G
NG_007974.1:g.5566A>G
ENST00000366425.4:c.265A>G
ENST00000366425.3:c.265A>G
ENST00000431044.5:c.*1350A>G
ENST00000455843.5:c.*1350A>G
ENST00000470814.1:n.2237A>G
NM_000407.4:c.265A>G
NR_037611.1:n.4005A>G
NR_037612.1:n.2509A>G
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Likely Pathogenic

Met criteria codes 5
PP1_Moderate PP4 PP3_Moderate PM3 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP1BB Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.265A>G variant in GP1BB is a missense variant predicted to cause substitution of Asparagine by Aspartic acid at amino acid 89 (p.Asn89Asp). This is a well known founder variant on the French Island of Reunion. This variant has been detected in at least 5 unrelated homozygous probands with Bernard-Soulier syndrome from the this island (PMID: 31997307, 1 PM3 points, PM3). At least one patient (Patient BSS1 in PMID: 31997307) with this variant had less than 10% expression of GPIba, GP1bb and GP9 measured by Western blot, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4). In both Family 2 and Family 3 of PMID: 31997307, the variant was reported to segregate in the proband plus 1 additional homozygous BSS affected sibling (2 points, PP1_Moderate). The computational predictor REVEL gives a score of 0.955, which is above the ClinGen PD VCEP threshold of >0.773 and predicts a damaging effect on GP1BB function (PP3_Moderate). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PM3, PP1_Moderate, PP3_Moderate, PP4 and PM2_Supporting (VCEP specifications version 1.1).
Met criteria codes
PP1_Moderate
In both Family 2 and Family 3 of PMID: 31997307, the variant was reported to segregate in the proband plus 1 additional homozygous BSS affected sibling (2 points, PP1_Moderate).
PP4
At least one patient (Patient BSS1 in PMID: 31997307) with this variant had less than 10% expression of GP1bb and GP9 measured by Western blot, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4).
PP3_Moderate
The computational predictor REVEL gives a score of 0.955, which is above the ClinGen PD VCEP threshold of >0.773 and predicts a damaging effect on GP1BB function (PP3_Moderate).
PM3
This variant has been detected in at least 5 unrelated homozygous probands with Bernard-Soulier syndrome from the French Island of Reunion (PMID: 31997307, 1 PM3 points).
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
Curation History
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