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Variant: NM_000257.4(MYH7):c.1969A>C (p.Lys657Gln)

CA011527

164351 (ClinVar)

Gene: MYH7
Condition: hypertrophic cardiomyopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: bec6c1d7-894c-4ea5-a19d-b6bc063f2fde
Approved on: 2022-07-31
Published on: 2022-07-31

HGVS expressions

NM_000257.4:c.1969A>C
NM_000257.4(MYH7):c.1969A>C (p.Lys657Gln)
NC_000014.9:g.23426852T>G
CM000676.2:g.23426852T>G
NC_000014.8:g.23896061T>G
CM000676.1:g.23896061T>G
NC_000014.7:g.22965901T>G
NG_007884.1:g.13810A>C
ENST00000355349.4:c.1969A>C
ENST00000355349.3:c.1969A>C
NM_000257.3:c.1969A>C
More

Uncertain Significance

Met criteria codes 4
PM2_Supporting PP1 PP3 PM1
Not Met criteria codes 15
BS4 BS3 BS1 BP5 BP2 BP4 PS3 BA1 PVS1 PS2 PS1 PS4_Supporting PM6 PM4 PM5

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
The NM_000257.4(MYH7):c.1969A>C (p.Lys657Gln) variant in MYH7 has been reported in at least 1 individual with HCM and segregated with HCM in at least 3 affected relatives (PP1; Hill 2015 PMID:26337809; Walsh 2017 PMID:26337809; LMM pers. comm.). Due to potential overlap in the individuals reported, PS4_Supporting criteria is not met. This variant was absent from large population studies (PM2_Supporting; http://gnomad.broadinstitute.org, v2.1.1). Following the ClinGen Sequence Variant Interpretation (SVI) working group recommendation for weight adjustment of the PM2 criterion due to concerns that rarity in the general population may not meet the relative odds of pathogenicity for moderate evidence, the PM2 criterion was downgraded to PM2_Supporting. This variant lies in the head region of the protein (aa 181-937) and missense variants in this region are statistically more likely to be associated with HCM (PM1; Walsh 2017 PMID:27532257). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (PP3). In summary, due to insufficient evidence, this variant meets criteria to be classified as uncertain significance for hypertrophic cardiomyopathy in an autosomal dominant manner. ACMG/AMP Criteria applied: PP1, PM2_Supporting, PM1, PP3.
Met criteria codes
PM2_Supporting
Absent from gnomAD with good coverage in this region.
PP1
3 meioses reported. Note that the family reported by LMM is the same as the one reported in Hill 2015.
PP3
REVEL score = 0.735 (>internal laboratory threshold of 0.7)
PM1
located in the myosin head domain
Not Met criteria codes
BS4
No affected non-segregations.
BS3
functional studies not reported
BS1
Absent from gnomAD with good coverage in this region.
BP5
Not found in a case with additional variants reported.
BP2
Not reported with additional pathogenic variants.
BP4
REVEL score = 0.735
PS3
functional studies not reported
BA1
Absent from gnomAD with good coverage in this region.
PVS1
Not a truncating variant
PS2
Not de novo
PS1
No other variants at this codon in ClinVar or HGMD that are potentially P.
PS4_Supporting
Identified in 1 proband with HCM
PM6
Not de novo
PM4
Not an insertion/deletion
PM5
No other variants at this codon in ClinVar or HGMD that are potentially P.
Curation History
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