The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000138.5(FBN1):c.1147G>A (p.Glu383Lys)

CA011960

200177 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: d0b6949d-1d14-4ad1-a119-d219fef5a5be
Approved on: 2024-05-23
Published on: 2024-10-31

HGVS expressions

NM_000138.5:c.1147G>A
NM_000138.5(FBN1):c.1147G>A (p.Glu383Lys)
NC_000015.10:g.48520659C>T
CM000677.2:g.48520659C>T
NC_000015.9:g.48812856C>T
CM000677.1:g.48812856C>T
NC_000015.8:g.46600148C>T
NG_008805.2:g.130130G>A
ENST00000559133.6:c.1147G>A
ENST00000674301.2:c.1147G>A
ENST00000316623.10:c.1147G>A
ENST00000316623.9:c.1147G>A
ENST00000537463.6:c.636+17052G>A
NM_000138.4:c.1147G>A
More

Likely Pathogenic

Met criteria codes 5
PP3 PP2 PP4 PM2_Supporting PS4_Moderate
Not Met criteria codes 1
PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.1147G>A is a missense variant in FBN1 predicted to cause a substitution of a glutamic acid by lysine at amino acid 383 (p.Glu383Lys). This variant was found in a proband with a systemic score >7 and thoracic aortic aneurysm and/or dissection, which is a highly specific phenotype for Marfan syndrome (MFS) (PMID 11700157, internal lab data, PP4). This variant has been reported four times in ClinVar: once as pathogenic, once as likely pathogenic, and twice as uncertain significance (Variation ID: 200177). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). This variant has been reported in the literature in at least three individuals with clinical features of MFS and/or thoracic aortic aneurysm and dissection (PS4_Mod; PMID 19159394, Invitae ClinVar entry, internal lab data) and in an individual with left iliac aneurysm (GeneDx internal lab data). Computational prediction tools and conservation analysis are inconclusive with regards to a possible impact on this variant’s protein function and structure (REVEL: 0.702). This variant is located in the last nucleotide of exon 9. In silico prediction programs predict that this variant may disrupt RNA splicing (PP3). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS4_Mod, PM2_Sup, PP2, PP3, PP4
Met criteria codes
PP3
REVEL score: 0.702 (<0.75 cut-off); Weakening of canonical donor site: MaxEnt: -41.6%, NNSPLICE: -10.6%, GeneSplixer: -39.5% (Splice AI Donor loss: 0.44)
PP2
Missense variant
PP4
1 indv with SS>7 and TAAD
PM2_Supporting
Absent in gnomAD
PS4_Moderate
2 Points
Not Met criteria codes
PM1
Glu in TB1 domain
Curation History
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