The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000257.3(MYH7):c.3658_3660delGAG (p.Glu1220del)

CA013921

42968 (ClinVar)

Gene: MYH7
Condition: Ebstein anomaly
Inheritance Mode: Autosomal dominant inheritance
UUID: e8215039-95f4-4f85-a85e-1cc2d33278f0
Approved on: 2021-03-22
Published on: 2021-08-25

HGVS expressions

NM_000257.3:c.3658_3660delGAG
NM_000257.3(MYH7):c.3658_3660delGAG (p.Glu1220del)
NC_000014.9:g.23419913_23419915del
CM000676.2:g.23419913_23419915del
NC_000014.8:g.23889122_23889124del
CM000676.1:g.23889122_23889124del
NC_000014.7:g.22958962_22958964del
NG_007884.1:g.20749_20751del
ENST00000355349.4:c.3658_3660del
ENST00000355349.3:c.3658_3660del
NM_000257.3:c.3658_3660del
NM_000257.4:c.3658_3660del
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Uncertain Significance

Met criteria codes 3
PM2 PM4_Supporting PS4_Supporting
Not Met criteria codes 1
PP1

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
The c.3658_3660del (p.Glu1220del) variant in MYH7 has been reported in 2 individuals with Ebstein anomaly (PS4_Supporting; Postma 2010 PMID:21127202; Bettinelli 2013 PMID 23956225; Partners LMM ClinVar SCV000059512.5). This variant segregated with Ebstein anomaly in 3 affected individuals from one family (Partners LMM ClinVar SCV000059512.5). While the expert panel waived the ACMG/AMP recommendation for demonstrating segregation in more than one family given that MYH7 is a well-established cardiomyopathy gene, its role in Ebstein anomaly is less established. Therefore, the expert panel felt that the PP1 pathogenic code should not be applied in this case given that all segregations came from one family. This variant was absent from large population studies (PM2; http://gnomad.broadinstitute.org). This variant is a deletion of 1 amino acid at position 1220 and is not predicted to alter the protein reading-frame. Given that only 1 amino acid has been deleted, the expert panel felt that adjusting to supporting evidence would be more appropriate in this case (PM4_Supporting). In summary, this variant is classified as uncertain significance for Ebstein anomaly in an autosomal dominant manner. MYH7-specific ACMG/AMP criteria applied (Kelly 2018 PMID:29300372): PM2; PM4_Supporting; PS4_ Supporting.
Met criteria codes
PM2
Absent from ExAC
PM4_Supporting
Inframe indel
PS4_Supporting
2 probands with Ebstein anomaly including ClinVar SCV000059512.5

Not Met criteria codes
PP1
3 segregations from ClinVar SCV000059512.5
Curation History
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