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  • See Evidence submitted by expert panel for details.

Variant: NM_000257.4(MYH7):c.5534G>A (p.Arg1845Gln)

CA016210

181286 (ClinVar)

Gene: MYH7
Condition: cardiomyopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: a2203f93-dad8-49ac-91b6-2433e306cb05
Approved on: 2021-11-19
Published on: 2021-12-09

HGVS expressions

NM_000257.4:c.5534G>A
NM_000257.4(MYH7):c.5534G>A (p.Arg1845Gln)
NC_000014.9:g.23415020C>T
CM000676.2:g.23415020C>T
NC_000014.8:g.23884229C>T
CM000676.1:g.23884229C>T
NC_000014.7:g.22954069C>T
NG_007884.1:g.25642G>A
ENST00000355349.4:c.5534G>A
ENST00000355349.3:c.5534G>A
NM_000257.3:c.5534G>A
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Uncertain Significance

Met criteria codes 2
PP3 PM2
Not Met criteria codes 20
PS3 PS2 PS4 PS1 PP1 PVS1 BA1 PM4 PM6 PM1 PM5 BS2 BS4 BS3 BS1 BP3 BP7 BP5 BP2 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
The NM_000257.4(MYH7):c.5534G>A (p.Arg1845Gln) variant has been identified in 2 individuals with unspecified cardiomyopathy (van Lint FHM 2019 PMID: 30847666; GeneDx pers. comm.), in 1 individual with LVNC (van Waning 2020 PhD Thesis: https://repub.eur.nl/pub/124773/dissertation-van-Waning.pdf) and 1 individual with anthracycline-associated cardiomyopathy (Wasielewski 2014 PMID: 25332820); however, due to the nature of the associated phenotypes, this data is insufficient to apply the PS4 criterion. This variant has also been identified in 0.003% (1/34584) of Latino/Admixed American chromosomes by gnomAD v2.1.1 (PM2; https://gnomad.broadinstitute.org). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (PP3). A different pathogenic missense variant has been previously identified at this codon; however, it has been reported to cause myosin storage myopathy and the additional evidence is insufficient to determine the role of this variant in cardiomyopathy conclusively (c.5533C>T p.Arg1845Trp- Variation ID 14114). Therefore, the PM5 criterion has not been applied. In summary, due to insufficient evidence, this variant is classified as uncertain significance for cardiomyopathy in an autosomal dominant manner. MYH7-specific ACMG/AMP criteria applied (Kelly 2018 PMID:29300372): PM2, PP3.
Met criteria codes
PP3
In silico analysis programs (SIFT, PolyPhen-2, Mutation Taster) predict this variant to have an impact on the protein function.
PM2
This variant has been identified in 1/248590 (0.0004%) of alleles tested from presumed healthy individuals in the Genome Aggregation Database (gnomAD), including 0.0029% (1/34,584) of Latino alleles.
Not Met criteria codes
PS3
none available
PS2
none available
PS4
This variant has been previously reported in a patient with non-compaction cardiomyopathy and in a family with history of anthracycline-associated cardiomyopathy, heart failure and second cardiac death (individual(s) carrying the variant not specified – PMID 25332820, Jacob Isaäc van Waning PhD 2020).
PS1
A different missense substitution at this codon (p.Arg1845Trp) has been classified as pathogenic in association with myosin storage myopathy (PMID: 15699387, 17118657, 20376763, 19336582) and reported in ClinVar with conflicting classifications in association with HCM.
PP1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PVS1
Missense variant
BA1
This variant has been identified in 1/248590 (0.0004%) of alleles tested from presumed healthy individuals in the Genome Aggregation Database (gnomAD), including 0.0029% of Latino alleles.
PM4
Missense variant
PM6
none available
PM1
not in head domain
PM5
A different missense substitution at this codon (p.Arg1845Trp) has been classified as pathogenic in association with myosin storage myopathy (PMID: 15699387, 17118657, 20376763, 19336582) and reported in ClinVar with conflicting classifications in association with HCM.
BS2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS3
none available
BS1
This variant has been identified in 1/248590 (0.0004%) of alleles tested from presumed healthy individuals in the Genome Aggregation Database (gnomAD), including 0.0029% of Latino alleles.
BP3
Missense variant
BP7
Missense variant
BP5
n/a
BP2
n/a
BP4
In silico analysis programs (SIFT, PolyPhen-2, Mutation Taster) predict this variant to have an impact on the protein function.
Curation History
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