The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000257.4(MYH7):c.5647G>A (p.Glu1883Lys)

CA016328

14121 (ClinVar)

Gene: MYH7
Condition: hypertrophic cardiomyopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: a028f459-e85d-4cf0-be63-4a0532d0ddc4
Approved on: 2021-07-26
Published on: 2021-07-26

HGVS expressions

NM_000257.4:c.5647G>A
NM_000257.4(MYH7):c.5647G>A (p.Glu1883Lys)
ENST00000355349.4:c.5647G>A
ENST00000355349.3:c.5647G>A
NM_000257.3:c.5647G>A
NC_000014.9:g.23414015C>T
CM000676.2:g.23414015C>T
NC_000014.8:g.23883224C>T
CM000676.1:g.23883224C>T
NC_000014.7:g.22953064C>T
NG_007884.1:g.26647G>A
More

Uncertain Significance

Met criteria codes 3
PP3 PM2 PS4_Supporting
Not Met criteria codes 19
PVS1 PS3 BA1 PS2 PS1 PP1 PM6 PM1 PM4 PM5 PM3 BS3 BS4 BS1 BP3 BP5 BP2 BP7 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
NM_000257.4(MYH7):c.5647G>A (p.Glu1883Lys) The c.5647G>A (p.Glu1883Lys) variant in MYH7 has been reported in the homozygous state in 1 individual from a consanguineous family with myosin storage myopathy, HCM and a family history consistent with recessive inheritance (Tajharghi 2007 PMID 17372140) and in 4 individuals with HCM from testing laboratories (PS4_Supporting; Walsh 2017 PMID:27532257; GeneDx pers. comm.; LMM pers. comm.; OMGL pers. comm.). This variant has been identified in 0.01% (1/18716) of African/African American chromosomes by gnomAD v2.1.1 (https://gnomad.broadinstitute.org), but absent from all other populations (PM2). In vitro functional studies provide conflicting evidence on the impact of this on protein function, with some suggesting a potential impact (Viswanathan 2017 PMID: 28973424; Armel 2009 PMID: 19336582), while another suggests that it has a similar function as its wild time counterpart (Dahl-Halvarsson PMID 28125727). Therefore, this data is currently insufficient to establish functional impact and apply PS3. Computational prediction tools and conservation analysis suggest that this variant may impact the protein (PP3). In summary, due to insufficient evidence, this variant is classified as uncertain significance for hypertrophic cardiomyopathy in an autosomal dominant manner. MYH7-specific ACMG/AMP criteria applied (Kelly 2018 PMID:29300372): PS4_Supporting, PM2, PP3.
Met criteria codes
PP3
In silico analysis programs (SIFT, PolyPhen-2, Mutation Taster) predict this variant to have an impact on the protein function
PM2
1/8716 in Africans and 1/31396 in total
PS4_Supporting
variant was reported in 4 apparently unrelated individuals with hypertrophic cardiomyopathy (internal laboratories data from the ClinGen CMP working group). Genedx: 2, LMM :1, OMGL :
Not Met criteria codes
PVS1
n/a
PS3
Functional studies (in vivo using C. Elegans, Drosophilia, and biochemical assays) reported conflicting data to determine the effect of this variant on the protein, with some showing a potential biological impact (PMID 28973424 , 19336582 referred as “p.Glu1886Lys”), and some showing function similar to wild-type (PMID 28125727).
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS2
no de novo occurrences reported
PS1
No other variants detected at this codon
PP1
No segregation data
PM6
no de novo occurrences reported
PM1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM4
n/a
PM5
No other variants detected at this codon
PM3
n/a
BS3
see below
BS4
No segregation data
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP3
n/a
BP5
n/a
BP2
n/a
BP7
n/a
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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