The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000540.2(RYR1):c.12121C>T (p.Arg4041Trp)

CA023969

133032 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
UUID: 6dd6f102-839e-4a0b-bd9c-6f2c126ed15b
Approved on: 2021-05-27
Published on: 2021-05-27

HGVS expressions

NM_000540.2:c.12121C>T
NM_000540.2(RYR1):c.12121C>T (p.Arg4041Trp)
ENST00000359596.8:c.12121C>T
ENST00000355481.8:c.12106C>T
ENST00000359596.7:n.12121C>T
ENST00000360985.7:c.12103C>T
ENST00000593322.1:n.730C>T
ENST00000594335.5:n.5490C>T
NM_001042723.1:c.12106C>T
NM_000540.3:c.12121C>T
NM_001042723.2:c.12106C>T
NC_000019.10:g.38548259C>T
CM000681.2:g.38548259C>T
NC_000019.9:g.39038899C>T
CM000681.1:g.39038899C>T
NC_000019.8:g.43730739C>T
NG_008866.1:g.119560C>T
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Uncertain Significance

Met criteria codes 1
BP4
Not Met criteria codes 1
PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of arginine with tryptophan at codon 4041 of the RYR1 protein, p.(Arg4041Trp). The maximum allele frequency for this variant among the six major gnomAD populations is NFE: 0.000026, a frequency consistent with pathogenicity for MHS. This variant has been reported in an individual without a clear personal or family history of an MH episode, the individual had a positive in vitro contracture test (IVCT) result, this does not meet PS4 (PMID:16835904). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score <0.5 (0.435) supports a benign status for this variant, BP4. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: BP4.
Met criteria codes
BP4
A REVEL score <0.5 (0.435) supports a benign status for this variant, BP4.
Not Met criteria codes
PS4
This variant has been reported in an individual without a clear personal or family history of an MH episode, the individual had a positive in vitro contracture test (IVCT) result, this does not meet PS4 (PMID:16835904).
Curation History
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