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Variant: NM_000540.2(RYR1):c.12848A>T (p.Glu4283Val)

CA024011

133042 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: c4ca61f4-ae39-4b34-8ab0-678675c573f7
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.12848A>T
NM_000540.2(RYR1):c.12848A>T (p.Glu4283Val)
NC_000019.10:g.38565182A>T
CM000681.2:g.38565182A>T
NC_000019.9:g.39055822A>T
CM000681.1:g.39055822A>T
NC_000019.8:g.43747662A>T
NG_008866.1:g.136483A>T
ENST00000688602.1:n.1258A>T
ENST00000689936.1:n.1240A>T
ENST00000359596.8:c.12848A>T
ENST00000355481.8:c.12833A>T
ENST00000359596.7:n.12848A>T
ENST00000360985.7:c.12830A>T
ENST00000594335.5:n.6217A>T
NM_001042723.1:c.12833A>T
NM_000540.3:c.12848A>T
NM_001042723.2:c.12833A>T
NM_000540.3(RYR1):c.12848A>T (p.Glu4283Val)

Uncertain Significance

The Expert Panel has overridden the computationally generated classification - "[unknown]"
Not Met criteria codes 4
BP4 PS4 PP3 PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glutamic acid with valine at codon 4283 of the RYR1 protein, p.(Glu4283Val). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in one individual with a personal or family history of a malignant hyperthermia reaction, a second variant of uncertain significance, p.(Val218Ile), was also identified. This individual did not have an in vitro contracture test (IVCT) or a caffeine halothane contracture test (CHCT) result, PS4 was not implemented (PMID: 16732084). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score of 0.561 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: none.
Not Met criteria codes
BP4
A REVEL score of 0.561 supports neither a pathogenic nor a benign status for this variant.
PS4
This variant has been reported in one individual with a personal or family history of a malignant hyperthermia reaction, a second variant of uncertain significance, p.(Val218Ile), was also identified. This individual did not have an in vitro contracture test (IVCT) or a caffeine halothane contracture test (CHCT) result, PS4 was not implemented (PMID: 16732084).
PP3
A REVEL score of 0.561 supports neither a pathogenic nor a benign status for this variant.
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
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