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Variant: NM_000540.2(RYR1):c.14627A>G (p.Lys4876Arg)

CA024200

133081 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: c0331ac2-972c-4b78-ad2a-8ceb6915a9db
Approved on: 2023-12-15
Published on: 2023-12-15

HGVS expressions

NM_000540.2:c.14627A>G
NM_000540.2(RYR1):c.14627A>G (p.Lys4876Arg)
NC_000019.10:g.38580485A>G
CM000681.2:g.38580485A>G
NC_000019.9:g.39071125A>G
CM000681.1:g.39071125A>G
NC_000019.8:g.43762965A>G
NG_008866.1:g.151786A>G
ENST00000593677.2:c.1563A>G
ENST00000688602.1:c.2960A>G
ENST00000689936.1:c.2932A>G
ENST00000359596.8:c.14627A>G
ENST00000355481.8:c.14612A>G
ENST00000359596.7:c.14627A>G
ENST00000360985.7:c.14609A>G
NM_001042723.1:c.14612A>G
NM_000540.3:c.14627A>G
NM_001042723.2:c.14612A>G
NM_000540.3(RYR1):c.14627A>G (p.Lys4876Arg)
More

Pathogenic

Met criteria codes 5
PP1_Strong PS4_Moderate PP3_Moderate PS3_Moderate PM1_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of lysine with arginine at codon 4876 of the RYR1 protein, p.(Lys4876Arg). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in four unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID:15731587, PMID:16163667, PMID:19191329, PMID:24433488). This variant segregates with MHS in seven individuals, PP1_Strong (PMID:27854207, Noda et al. 2023). Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (Noda et al. 2023). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Supporting (PMID: 21118704). A REVEL score >0.85 (0.912) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as Pathogenic. Criteria implemented: PS3_Moderate, PS4_Moderate, PM1_Supporting, PP1_Strong, PP3_Moderate.
Met criteria codes
PP1_Strong
This variant segregates with MHS in seven individuals, PP1_Strong (PMID:27854207, Noda et al. 2023).
PS4_Moderate
This variant has been reported in four unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID:15731587, PMID:16163667, PMID:19191329, PMID:24433488).
PP3_Moderate
A REVEL score >0.85 (0.912) supports a pathogenic status for this variant, PP3_Moderate.
PS3_Moderate
Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (Noda et al. 2023).
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
Curation History
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