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  • See Evidence submitted by expert panel for details.

Variant: NM_000540.2(RYR1):c.1841G>T (p.Arg614Leu)

CA024313

133108 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 2d50f12d-53e1-4c3b-bea8-d307ab18043a

HGVS expressions

NM_000540.2:c.1841G>T
NM_000540.2(RYR1):c.1841G>T (p.Arg614Leu)
NC_000019.10:g.38457546G>T
CM000681.2:g.38457546G>T
NC_000019.9:g.38948186G>T
CM000681.1:g.38948186G>T
NC_000019.8:g.43640026G>T
NG_008866.1:g.28847G>T
ENST00000355481.8:c.1841G>T
ENST00000359596.7:n.1841G>T
ENST00000360985.7:c.1841G>T
NM_001042723.1:c.1841G>T
NM_000540.3:c.1841G>T
NM_001042723.2:c.1841G>T

Pathogenic

Met criteria codes 4
PS4 PP3_Moderate PP1_Strong PS3_Moderate
Not Met criteria codes 4
BS1 PM5 PM1 BA1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of Arginine with Leucine at codon 614 of the RYR1 protein, p.(Arg614Leu). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in nine unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:10051009; PMID:17710899; PMID:10484775 and others). Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:9334205). This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. This variant segregates with MHS in seven individuals, PP1_Strong (PMID:9389851; PMID:17710899). A REVEL score >0.85 supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as Pathogenic. Criteria implemented: PS4, PS3_Moderate, PP1_Strong, PP3_Moderate.
Met criteria codes
PS4
This variant has been reported in nine unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:10051009; PMID:17710899; PMID:10484775 and others).
PP3_Moderate
A REVEL score >0.85 supports a pathogenic status for this variant, PP3_Moderate.
PP1_Strong
This variant segregates with MHS in seven individuals, PP1_Strong (PMID:9389851; PMID:17710899).
PS3_Moderate
Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:9334205).
Not Met criteria codes
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM5
Another variant has been assessed as pathogenic at this codon, p.(Arg614Cys) (PMID:24433488), however, the Grantham score for Arg->Leu (102) is less that the Grantham score for Arg->Cys (180). PM5 was not implemented.
PM1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Approved on: 2021-03-18
Published on: 2021-03-31
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