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Variant: NM_000540.2(RYR1):c.2996G>A (p.Arg999His)

CA024384

133122 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 93979061-f613-43f6-a350-937e597ff4cd
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.2996G>A
NM_000540.2(RYR1):c.2996G>A (p.Arg999His)
NC_000019.10:g.38466216G>A
CM000681.2:g.38466216G>A
NC_000019.9:g.38956856G>A
CM000681.1:g.38956856G>A
NC_000019.8:g.43648696G>A
NG_008866.1:g.37517G>A
ENST00000599547.6:n.2996G>A
ENST00000359596.8:c.2996G>A
ENST00000355481.8:c.2996G>A
ENST00000359596.7:n.2996G>A
ENST00000360985.7:c.2996G>A
ENST00000594111.1:n.89G>A
NM_001042723.1:c.2996G>A
NM_000540.3:c.2996G>A
NM_001042723.2:c.2996G>A
NM_000540.3(RYR1):c.2996G>A (p.Arg999His)

Uncertain Significance

The Expert Panel has overridden the computationally generated classification - "[unknown]"
Not Met criteria codes 5
PP3 PM1 BP4 PS3 PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of Arginine with Histidine at codon 999 of the RYR1 protein, p.(Arg999His). The maximum allele frequency for this variant among the six major gnomAD populations is NFE: 0.00012, a frequency consistent with pathogenicity for MHS. This variant has been reported in two siblings with central core disease and multi-minicore disease (PMID:16372898). A functional study using patient lymphoblasts was published for this variant, this ex vivo assay did not show a significant shift in the EC50 for calcium release in response to RYR1 agonist as compared to wildtype lymphoblasts (PMID:16372898). This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score of 0.817 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Variant of Unknown Significance. No criteria were implemented.
Not Met criteria codes
PP3
A REVEL score of 0.817 supports neither a pathogenic nor a benign status for this variant.
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
BP4
A REVEL score of 0.817 supports neither a pathogenic nor a benign status for this variant.
PS3
A functional study using patient lymphoblasts was published for this variant, this ex vivo assay did not show a significant shift in the EC50 for calcium release in response to RYR1 agonist as compared to wildtype lymphoblasts (PMID:16372898).
PS4
This variant has been reported in two siblings with central core disease and multi-minicore disease (PMID:16372898).
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