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Variant: NM_000540.2(RYR1):c.497A>G (p.Asp166Gly)

CA024477

133141 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 84ce778f-a3f2-4126-9488-89cde4db818e
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.497A>G
NM_000540.2(RYR1):c.497A>G (p.Asp166Gly)
NC_000019.10:g.38444221A>G
CM000681.2:g.38444221A>G
NC_000019.9:g.38934861A>G
CM000681.1:g.38934861A>G
NC_000019.8:g.43626701A>G
NG_008866.1:g.15522A>G
ENST00000599547.6:n.497A>G
ENST00000359596.8:c.497A>G
ENST00000355481.8:c.497A>G
ENST00000359596.7:n.497A>G
ENST00000360985.7:c.497A>G
NM_001042723.1:c.497A>G
NM_000540.3:c.497A>G
NM_001042723.2:c.497A>G
NM_000540.3(RYR1):c.497A>G (p.Asp166Gly)
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Uncertain Significance

Met criteria codes 2
PM1 PP3_Moderate
Not Met criteria codes 5
PS4 PS3 BA1 BS1 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of aspartic acid with glycine at codon 166 of the RYR1 protein, p.(Asp166Gly). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in an individual with a personal or family history of an MH episode but without an in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, this is insufficient for PS4 to be implemented. This individual also had an additional variant in RYR1 assessed as likely pathogenic, p.(Arg2163His), phase unknown (PMID:16732084). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). A REVEL score >0.85 (0.967) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM1, PP3_Moderate.
Met criteria codes
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
PP3_Moderate
A REVEL score >0.85 (0.967) supports a pathogenic status for this variant, PP3_Moderate.
Not Met criteria codes
PS4
This variant has been reported in an individual with a personal or family history of an MH episode but without an in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, this is insufficient for PS4 to be implemented. This individual also had an additional variant in RYR1 assessed as likely pathogenic, p.(Arg2163His), phase unknown (PMID:16732084).
PS3
No functional studies were identified for this variant.
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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