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Variant: NM_000540.2(RYR1):c.8638G>A (p.Glu2880Lys)

CA024939

133232 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 5bc17d0d-cdbe-4948-9494-0c40a38f26cc
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.8638G>A
NM_000540.2(RYR1):c.8638G>A (p.Glu2880Lys)
NC_000019.10:g.38506492G>A
CM000681.2:g.38506492G>A
NC_000019.9:g.38997132G>A
CM000681.1:g.38997132G>A
NC_000019.8:g.43688972G>A
NG_008866.1:g.77793G>A
ENST00000599547.6:n.8638G>A
ENST00000359596.8:c.8638G>A
ENST00000355481.8:c.8638G>A
ENST00000359596.7:n.8638G>A
ENST00000360985.7:c.8635G>A
ENST00000594335.5:n.2090G>A
NM_001042723.1:c.8638G>A
NM_000540.3:c.8638G>A
NM_001042723.2:c.8638G>A
NM_000540.3(RYR1):c.8638G>A (p.Glu2880Lys)

Uncertain Significance

Met criteria codes 2
PP3_Moderate PS4_Supporting
Not Met criteria codes 1
PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glutamic acid with lysine at codon 2880 of the RYR1 protein, p.(Glu2880Lys). The maximum allele frequency for this variant among the six major gnomAD populations is NFE: 0.000009, a frequency consistent with pathogenicity for MHS. This variant has been reported in two unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, both of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), however, one of these individuals had a second variant of uncertain significance in RYR1 (p.Glu3290Lys) and was not counted toward PS4, PS4_Supporting was implemented (PMID:19191329). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score >0.85 (0.901) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Supporting, PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.901) supports a pathogenic status for this variant, PP3_Moderate.
PS4_Supporting
This variant has been reported in two unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, both of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), however, one of these individuals had a second variant of uncertain significance in RYR1 (p.Glu3290Lys) and was not counted toward PS4, PS4_Supporting was implemented (PMID:19191329).
Not Met criteria codes
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
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