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Variant: NM_000540.2(RYR1):c.947G>T (p.Arg316Leu)

CA024986

133242 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 8a9d6bc5-488c-4ce8-997d-ac68bffc5475

HGVS expressions

NM_000540.2:c.947G>T
NM_000540.2(RYR1):c.947G>T (p.Arg316Leu)
NC_000019.10:g.38448501G>T
CM000681.2:g.38448501G>T
NC_000019.9:g.38939141G>T
CM000681.1:g.38939141G>T
NC_000019.8:g.43630981G>T
NG_008866.1:g.19802G>T
ENST00000599547.6:n.947G>T
ENST00000359596.8:c.947G>T
ENST00000355481.8:c.947G>T
ENST00000359596.7:n.947G>T
ENST00000360985.7:c.947G>T
NM_001042723.1:c.947G>T
NM_000540.3:c.947G>T
NM_001042723.2:c.947G>T
NM_000540.3(RYR1):c.947G>T (p.Arg316Leu)

Uncertain Significance

Met criteria codes 2
PP3_Moderate PM1
Not Met criteria codes 5
BA1 BS1 BP4 PS3 PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of arginine with leucine at codon 316 of the RYR1 protein, p.(Arg316Leu). The maximum allele frequency for this variant among the six major gnomAD populations is EAS: 0.0001, a frequency consistent with pathogenicity for MHS. This variant has been reported in an individual with a personal or family history of an MH episode without an in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (no test recorded), this does not fulfill PS4 (PMID:16732084). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). A REVEL score >0.85 (0.928) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM1, PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.928) supports a pathogenic status for this variant, PP3_Moderate.
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS3
No functional studies were identified for this variant.
PS4
This variant has been reported in an individual with a personal or family history of an MH episode without an in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, this does not fulfill PS4 (PMID:16732084).
Approved on: 2023-04-06
Published on: 2023-04-06
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