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Variant: NM_000540.3(RYR1):c.488G>A (p.Arg163His)

CA066494

635269 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 0cd03106-9228-4a14-bb51-69b0321a262f

HGVS expressions

NM_000540.3:c.488G>A
NM_000540.3(RYR1):c.488G>A (p.Arg163His)
NC_000019.10:g.38444212G>A
CM000681.2:g.38444212G>A
NC_000019.9:g.38934852G>A
CM000681.1:g.38934852G>A
NC_000019.8:g.43626692G>A
NG_008866.1:g.15513G>A
ENST00000599547.6:n.488G>A
ENST00000359596.8:c.488G>A
ENST00000355481.8:c.488G>A
ENST00000359596.7:n.488G>A
ENST00000360985.7:c.488G>A
NM_000540.2:c.488G>A
NM_001042723.1:c.488G>A
NM_001042723.2:c.488G>A

Uncertain Significance

Met criteria codes 3
PS4_Supporting PM1 PP3_Moderate

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of arginine with histidine at codon 163 of the RYR1 protein, p.(Arg163His). This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID:30236257). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). A REVEL score >0.85 (0.864) supports a pathogenic status for this variant, PP3_Moderate. While another variant has been assessed as pathogenic at this codon, p.(Arg163Cys), PM5 is not implemented as the Grantham difference between arginine and histidine is not greater than the difference between arginine and cysteine. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Supporting, PM1, PP3_Moderate. 
Met criteria codes
PS4_Supporting
This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID:30236257).
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
PP3_Moderate
A REVEL score >0.85 (0.864) supports a pathogenic status for this variant, PP3_Moderate.
Approved on: 2023-04-06
Published on: 2023-04-06
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