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Variant: NM_000540.2(RYR1):c.7385C>T (p.Pro2462Leu)

CA069583

329061 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 071821c9-544e-4805-96a2-a9b36dd703be
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.7385C>T
NM_000540.2(RYR1):c.7385C>T (p.Pro2462Leu)
NC_000019.10:g.38500667C>T
CM000681.2:g.38500667C>T
NC_000019.9:g.38991307C>T
CM000681.1:g.38991307C>T
NC_000019.8:g.43683147C>T
NG_008866.1:g.71968C>T
ENST00000599547.6:n.7385C>T
ENST00000359596.8:c.7385C>T
ENST00000355481.8:c.7385C>T
ENST00000359596.7:n.7385C>T
ENST00000360985.7:c.7382C>T
ENST00000594335.5:n.837C>T
NM_001042723.1:c.7385C>T
NM_000540.3:c.7385C>T
NM_001042723.2:c.7385C>T
NM_000540.3(RYR1):c.7385C>T (p.Pro2462Leu)
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Uncertain Significance

Met criteria codes 1
PP3_Moderate
Not Met criteria codes 2
PM1 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of Proline with Leucine at codon 2462 of the RYR1 protein, p.(Pro2462Leu). The maximum allele frequency for this variant among the six major gnomAD populations is SAS: 0.000033, a frequency consistent with pathogenicity for MHS. To our knowledge this variant has not been reported in the literature in individuals who have a personal or family history of a malignant hyperthermia reaction. No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score >0.85 supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PP3_Moderate.
Met criteria codes
PP3_Moderate
REVEL 0.883
Not Met criteria codes
PM1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
REVEL 0.883
Curation History
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