The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000527.5(LDLR):c.-36T>G

CA10584714

250960 (ClinVar)

Gene: LDLR
Condition: hypercholesterolemia, familial
Inheritance Mode: Semidominant inheritance
UUID: bad8fe26-d331-499c-9a9d-7b0cd5027e56
Approved on: 2024-10-28
Published on: 2025-01-19

HGVS expressions

NM_000527.5:c.-36T>G
NM_000527.5(LDLR):c.-36T>G
NC_000019.10:g.11089513T>G
CM000681.2:g.11089513T>G
NC_000019.9:g.11200189T>G
CM000681.1:g.11200189T>G
NC_000019.8:g.11061189T>G
NG_009060.1:g.5133T>G
ENST00000559340.2:c.-36T>G
ENST00000560467.2:c.-36T>G
ENST00000558518.6:c.-36T>G
ENST00000455727.6:c.-36T>G
ENST00000535915.5:c.-36T>G
ENST00000545707.5:c.-36T>G
ENST00000557933.5:c.-36T>G
ENST00000557958.1:n.51T>G
ENST00000558013.5:c.-36T>G
ENST00000558518.5:c.-36T>G
ENST00000560502.5:n.51T>G
NM_000527.4:c.-36T>G
NM_001195798.1:c.-36T>G
NM_001195799.1:c.-36T>G
NM_001195800.1:c.-36T>G
NM_001195803.1:c.-36T>G
NM_001195798.2:c.-36T>G
NM_001195799.2:c.-36T>G
NM_001195800.2:c.-36T>G
NM_001195803.2:c.-36T>G
NR_163945.1:n.147A>C
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Uncertain Significance

Met criteria codes 3
PP4 PM2 BS3_Supporting
Not Met criteria codes 2
PS4 PP1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Familial Hypercholesterolemia Expert Panel Specifications to the ACMG/AMP Variant Classification Guidelines Version 1.2

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Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Familial Hypercholesterolemia VCEP
The NM_000527.5 (LDLR):c.-36T>G variant is classified as Uncertain significance – insufficient evidence for Familial Hypercholesterolemia by applying ACMG/AMP evidence codes PM2, PP4 and BS3_Supporting as defined by the ClinGen Familial Hypercholesterolemia Expert Panel LDLR-specific variant curation guidelines (specification version 1.2) on 28 October 2024. The supporting evidence is as follows: PM2: This variant is absent from gnomAD (gnomAD v4.1.0). PP4: Variant meets PM2, and is identified in one index case who fulfils DLCN criteria for probable FH after alternative causes of high cholesterol were excluded, reported in PMID 21538688 (Supplementary Table 2) by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain. BS3_Supporting: Level 3 assay performed with luciferase reporter gene assay in HepG2 cells and there was no significant deference observed in gene expression comparing to wild-type construct, reported in PMID 21538688 by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain. Level 3 assay performed with luciferase reporter gene assay in HepG2 cells showed 100% expression compared to wild-type, reported in PMID 31395865 by Kircher et al, 2019 from University of Washington, Seattle, USA.
Met criteria codes
PP4
Variant meets PM2, and is identified in one index case who fulfils DLCN criteria for probable FH after alternative causes of high cholesterol were excluded, reported in PMID 21538688 (Supplementary Table 2) by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain.
PM2
This variant is absent from gnomAD (gnomAD v4.1.0).
BS3_Supporting
Level 3 assay performed with luciferase reporter gene assay in HepG2 cells and there was no significant deference observed in gene expression comparing to wild-type construct, reported in PMID 21538688 by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain. Level 3 assay performed with luciferase reporter gene assay in HepG2 cells shown 100% expression compared to wild-type, reported in PMID31395865 by Kircher et al, 2019 from University of Washington, Seattle, USA.
Not Met criteria codes
PS4
One index case carries the variant and with hypercholesterolemic relatives described in PMID 21538688 (Supplementary Table 2), by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain.
PP1
One index case carries the variant and with hypercholesterolemic relatives described in PMID 21538688 (Supplementary Table 2), by De Castro-Oros et al, 2011 from Universidad de Zaragoza, Spain. Number of the affected relatives and their genetic information were not described.
Curation History
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