The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • The variant label for this record ("m.6721T>C") does not appear to be in HGVS format
  • Despite there being a valid 'cspec' property in the messages there's a discrepancy in message contents and CSPEC data: * Message Gene: MT-CO1 CSPEC Genes: [] * Message MONDOs: MONDO:0044970 CSPEC MONDO: []
  • No CSPEC computed assertion could be determined for this classification!


Variant: m.6721T>C

CA120610

9665 (ClinVar)

Gene: MT-CO1
Condition: mitochondrial disease
Inheritance Mode: Mitochondrial inheritance
UUID: 7f250dd2-7a21-4495-8762-cd39cd9926ae
Approved on: 2024-03-11
Published on: 2024-11-19

HGVS expressions

NC_012920.1:m.6721T>C
J01415.2:m.6721T>C
ENST00000361624.2:c.818T>C

Uncertain Significance

Met criteria codes 3
PP3 PM2_Supporting PM6_Supporting
Not Met criteria codes 3
PS2 PS4 PS3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Mitochondrial Disease Nuclear and Mitochondrial Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1_mtDNA

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Mitochondrial Diseases VCEP
The m.6721T>C (p.M273T) variant in MT-CO1 has been reported in one individual to date, in a 58-year-old woman with acquired idiopathic sideroblastic anemia (PMID: 9389715). The variant was present in bone marrow from the proband and absent in her mother’s blood (PM6_supporting). There have not been additional affected individuals reported to date. This variant is absent in the GenBank dataset, Helix dataset, and gnomAD v3.1.2 (PM2_supporting). The computational predictor APOGEE gives a consensus rating of pathogenic with a score of 0.72 (Min=0, Max=1; APOGEE2 score is 0.834), which predicts a damaging effect on gene function (PP3). There are no cybrids, single fiber studies, or other functional assays reported on this variant. In summary, this variant meets criteria to be classified as uncertain significance for primary mitochondrial disease inherited in a mitochondrial manner. This classification was approved by the NICHD/NINDS U24 ClinGen Mitochondrial Disease Variant Curation Expert Panel on March 11, 2024. Mitochondrial DNA-specific ACMG/AMP criteria applied (PMID: 32906214): PP3, PM2_supporting, PM6_supporting.
Met criteria codes
PP3
The computational predictor APOGEE has scored m.6721T>C as deleterious with raw scores >0.5. APOGEE1: P (0.72 raw score) and APOGEE2: LP (0.834 raw score).
PM2_Supporting
The m.6721T>C variant is absent in three major databases: the Mitomap GenBank dataset (61,168 sequences), gnomAD3.1.2 (56433 sequences), and Helix (195,583 sequences). Databases were last queried on 01/17/2024.
PM6_Supporting
The variant was present in bone marrow from the proband and absent in her mother’s blood (PM6_supporting).
Not Met criteria codes
PS2
The variant was present in bone marrow from the proband and absent in her mother’s blood (PM6_supporting).
PS4
The m.6721T>C variant in MT-CO1 has been reported in only one patient to date, a 58-year-old woman with acquired idiopathic sideroblastic anemia (AISA). (PMID 9389715).
PS3
No functional studies were found in our review of the literature.
Curation History
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