The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No CSPEC related information was provided by the message!

  • See Evidence submitted by expert panel for details.

Variant: NM_000038.6(APC):c.1311_1312+1del

CA251620

826 (ClinVar)

Gene: APC
Condition: familial adenomatous polyposis 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 4164a1aa-3ebc-40fb-be5f-f08864f41253
Approved on: 2023-02-19
Published on: 2023-03-14

HGVS expressions

NM_000038.6:c.1311_1312+1del
NM_000038.6(APC):c.1311_1312+1del
NC_000005.10:g.112819343_112819345del
CM000667.2:g.112819343_112819345del
NC_000005.9:g.112155040_112155042del
CM000667.1:g.112155040_112155042del
NC_000005.8:g.112182939_112182941del
NG_008481.4:g.131823_131825del
ENST00000257430.9:c.1311_1312+1del
ENST00000257430.8:c.1311_1312+1del
ENST00000507379.5:c.1257_1258+1del
ENST00000508376.6:c.1311_1312+1del
ENST00000508624.5:c.*633_*634+1del
ENST00000512211.6:c.1311_1312+1del
NM_000038.5:c.1311_1312+1del
NM_001127510.2:c.1311_1312+1del
NM_001127511.2:c.1257_1258+1del
NM_001354895.1:c.1311_1312+1del
NM_001354896.1:c.1311_1312+1del
NM_001354897.1:c.1341_1342+1del
NM_001354898.1:c.1236_1237+1del
NM_001354899.1:c.1227_1228+1del
NM_001354900.1:c.1134_1135+1del
NM_001354901.1:c.1134_1135+1del
NM_001354902.1:c.1038_1039+1del
NM_001354903.1:c.1008_1009+1del
NM_001354904.1:c.933_934+1del
NM_001354905.1:c.831_832+1del
NM_001354906.1:c.462_463+1del
NM_001127510.3:c.1311_1312+1del
NM_001127511.3:c.1257_1258+1del
NM_001354895.2:c.1311_1312+1del
NM_001354896.2:c.1311_1312+1del
NM_001354897.2:c.1341_1342+1del
NM_001354898.2:c.1236_1237+1del
NM_001354899.2:c.1227_1228+1del
NM_001354900.2:c.1134_1135+1del
NM_001354901.2:c.1134_1135+1del
NM_001354902.2:c.1038_1039+1del
NM_001354903.2:c.1008_1009+1del
NM_001354904.2:c.933_934+1del
NM_001354905.2:c.831_832+1del
NM_001354906.2:c.462_463+1del
More

Pathogenic

Met criteria codes 4
PS4 PS2 PM2_Supporting PVS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
InSiGHT Hereditary Colorectal Cancer/Polyposis VCEP
The c.1311_1312+1del variant in APC occurs within the canonical splice donor site of intron 10. It is predicted to cause skipping of exon 10, resulting in a frameshift in a gene in which loss-of-function is an established disease mechanism (PVS1). This variant has been reported in a family with FAP and CHRPE (father [index] and two affected children), resulting in a total phenotype score of 1 (PS4_supporting). The variant occurred de novo in the index patient (paternity/ maternity confirmed; PS2). The variant is not reported in gnomAD (PM2_supporting). In summary, this variant meets the criteria to be classified as Pathogenic for FAP based on the ACMG/AMP criteria applied, as specified by the ClinGen InSiGHT Hereditary Colorectal Cancer/Polyposis Variant Curation Expert Panel: PVS1, PS2, PS4_supporting and PM2_supporting (VCEP specifications version 1; date of approval: 10/12/22).
Met criteria codes
PS4
This variant has been reported in family with documented diagnoses of FAP and CHRPE (father [index] and two affected children), whose phenotype scored 1 points in total (PS4_supporting).
PS2
In PMID: 8019566: Variant detected in a family with 3 affected members (2 generations) with ≥ 20 colorectal adenomas and CHRPE. For index patient paternity and maternity was confirmed and 1 phenotype point is reached leading to 2 de novo points, resulting in PS2.
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
PVS1
Variant affects splice site from List A (see APC specific modification; Fig 1B), PVS1 applies according modified decision tree for PVS1
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.