The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • The variant label for this record ("m.8618dupT") does not appear to be in HGVS format
  • Despite there being a valid 'cspec' property in the messages there's a discrepancy in message contents and CSPEC data: * Message Gene: MT-ATP6 CSPEC Genes: [] * Message MONDOs: MONDO:0044970 CSPEC MONDO: []
  • No CSPEC computed assertion could be determined for this classification!


Variant: m.8618dupT

CA254849

9648 (ClinVar)

Gene: MT-ATP6
Condition: mitochondrial disease
Inheritance Mode: Mitochondrial inheritance
UUID: b84901e5-6ef5-49fb-9a8c-e33e63225df1
Approved on: 2024-08-12
Published on: 2025-04-30

HGVS expressions

NC_012920.1:m.8618dup
J01415.2:m.8618dup
ENST00000361899.2:c.92dup

Likely Pathogenic

Met criteria codes 5
PVS1_Strong PS4_Supporting PM2_Supporting PP1 PM6_Supporting
Not Met criteria codes 1
PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Mitochondrial Disease Nuclear and Mitochondrial Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1_mtDNA

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Mitochondrial Diseases VCEP
The m.8618dupT (p.Thr33Hisfs*32) variant in MT-ATP6 has been reported in two unrelated individuals with primary mitochondrial disease (PS4_supporting; PMIDs: 32042910, 19124644). Clinical features in these individuals include developmental delay, learning difficulties, ataxia, spastic paraparesis, headache, cerebellar atrophy, white matter abnormalities, hearing loss, kidney failure, diabetes, cataracts, optic atrophy, retinal dystrophy, and short stature. The heteroplasmy levels in affected individuals ranged from 20% to 85%. This variant occurred de novo in one individual (absent in blood from mother, sister, and maternal aunt; PM6_supporting, PMID: 19124644). This variant segregated with disease in the other family (proband with heteroplasmy levels ranging from 20-65%; unaffected individuals including mother, sister, and maternal aunt with lower heteroplasmy levels ranging from 0-24%; PP1; PMID: 32042910). This frameshift variant results in a significant (>10%) truncation of the MT-ATP6 protein (PVS1_strong). This variant is absent in the GenBank dataset, Helix dataset, and gnomAD v3.1.2 (PM2_supporting). There are no in silico predictors for this type of variant in mitochondrial DNA. In summary, this variant meets criteria to be classified as likely pathogenic for primary mitochondrial disease inherited in a mitochondrial manner. This classification was approved by the NICHD/NINDS U24 ClinGen Mitochondrial Disease Variant Curation Expert Panel on August 12, 2024. Mitochondrial DNA-specific ACMG/AMP criteria applied (PMID: 32906214): PS4_supporting, PM6_supporting, PP1, PM2_supporting, PVS1_strong.
Met criteria codes
PVS1_Strong
This frameshift variant results in a significant (>10%) truncation of the MT-ATP6 protein (PVS1_strong).
PS4_Supporting
The m.8618dupT (p.Thr33Hisfs*32) variant in MT-ATP6 has been reported in two unrelated individuals with primary mitochondrial disease (PS4_supporting; PMIDs: 32042910, 19124644). Clinical features in these individuals include developmental delay, learning difficulties, ataxia, spastic paraparesis, headache, cerebellar atrophy, white matter abnormalities, hearing loss, kidney failure, diabetes, cataracts, optic atrophy, retinal dystrophy, and short stature. The heteroplasmy levels in affected individuals ranged from 20% to 85%.
PM2_Supporting
This variant is absent in the GenBank dataset, Helix dataset, and gnomAD v3.1.2 (PM2_supporting).
PP1
This variant segregated with disease in the other family (affected proband with heteroplasmy levels ranging from 20-65%; unaffected individuals: mother, sister, and maternal aunt with lower heteroplasmy levels ranging from 0-24%; PP1; PMID: 32042910).
PM6_Supporting
This variant occurred de novo in one individual (absent in blood from mother, sister, and maternal aunt; PM6_supporting, PMID: 19124644).
Not Met criteria codes
PP3
There are no in silico predictors for this type of variant in mitochondrial DNA.
Curation History
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