The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000051.4(ATM):c.8565_8566delinsAA (p.Ser2855_Val2856delinsArgIle)

CA293967

140897 (ClinVar)

Gene: ATM
Condition: ATM-related cancer predisposition
Inheritance Mode: Autosomal dominant inheritance
UUID: 45c945d8-eb06-4e75-a8d5-842509e63906
Approved on: 2025-11-11
Published on: 2025-11-11

HGVS expressions

NM_000051.4:c.8565_8566delinsAA
NM_000051.4(ATM):c.8565_8566delinsAA (p.Ser2855_Val2856delinsArgIle)
NC_000011.10:g.108345889_108345890delinsAA
CM000673.2:g.108345889_108345890delinsAA
NC_000011.9:g.108216616_108216617delinsAA
CM000673.1:g.108216616_108216617delinsAA
NC_000011.8:g.107721826_107721827delinsAA
NG_009830.1:g.128058_128059delinsAA
NG_054724.1:g.128943_128944delinsTT
ENST00000452508.7:c.8565_8566delinsAA
ENST00000713593.1:c.*8036_*8037delinsAA
ENST00000278616.9:c.8565_8566delinsAA
ENST00000638786.2:n.1263_1264delinsAA
ENST00000682286.1:n.3322_3323delinsAA
ENST00000682302.1:n.2983_2984delinsAA
ENST00000683174.1:n.10049_10050delinsAA
ENST00000683524.1:n.3789_3790delinsAA
ENST00000684152.1:n.3981_3982delinsAA
ENST00000684180.1:n.1039_1040delinsAA
ENST00000684447.1:n.5058_5059delinsAA
ENST00000527805.6:c.*3629_*3630delinsAA
ENST00000675595.1:c.*3700_*3701delinsAA
ENST00000675843.1:c.8565_8566delinsAA
ENST00000278616.8:c.8565_8566delinsAA
ENST00000452508.6:c.8565_8566delinsAA
ENST00000524755.5:c.227-10598_227-10597delinsTT
ENST00000524792.5:n.4780_4781delinsAA
ENST00000525729.5:c.641-36819_641-36818delinsTT
ENST00000526725.1:n.272-5526_272-5525delinsTT
ENST00000527531.5:c.*1196+9025_*1196+9026delinsTT
ENST00000615746.4:c.*1196+9025_*1196+9026delinsTT
NM_000051.3:c.8565_8566delinsAA
NM_001330368.1:c.641-36819_641-36818delinsTT
NM_001351110.1:c.695-10598_695-10597delinsTT
NM_001351834.1:c.8565_8566delinsAA
NR_147053.2:n.2301+9025_2301+9026delinsTT
NM_001330368.2:c.641-36819_641-36818delinsTT
NM_001351110.2:c.695-10598_695-10597delinsTT
NM_001351834.2:c.8565_8566delinsAA
NR_147053.3:n.2299+9025_2299+9026delinsTT
More

Pathogenic

Met criteria codes 3
PS3_Supporting PM2_Supporting PM3_Very Strong

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Hereditary Breast, Ovarian and Pancreatic Cancer Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for ATM Version 1.3.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Hereditary Breast, Ovarian and Pancreatic Cancer VCEP
The c.8565_8566delinsAA variant in ATM is an in-frame deletion insertion predicted to cause substitution of serine and valine by arginine and isoleucine at amino acids 2855-2856 This variant has been detected in multiple unrelated individuals with Ataxia-Telangiectasia (PMIDs: 9872980, 10817650, 12673797, 26896183, 37438524). This variant is absent from gnomAD v4.1.0. Western blotting in ATM null cells transfected with cDNA carrying this variant showed inactive phosphorylation of ATM downstream targets as compared to wild-type controls indicating that this variant impacts protein function (PMID: 19431188). The computational predictor Provean gives a score of -4.871, evidence that correlates with impact to ATM function. In summary, this variant meets the criteria to be classified as pathogenic for autosomal dominant ATM-related cancer predisposition and autosomal recessive Ataxia-Telangiectasia based on the ACMG/AMP criteria applied as specified by the HBOP VCEP. (PM3_Very Strong, PM2_Supporting, PS3_Supporting).
Met criteria codes
PS3_Supporting
Non-functional in a single ATM-specific protein assay (PMID: 19431188) (PS3_Supporting)
PM2_Supporting
Variant is absent in the GnomAD v4.1.0 cohort (PM2_Supporting)
PM3_Very Strong
This variant has been observed in a compound heterozygous state (presumed and/or confirmed) in multiple individuals with Ataxia-Telangiectasia (PMIDs: 37438524, 26896183, 10817650, 9872980, 12673797) (PM3_Very Strong, 12 points)
Curation History
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