The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Despite there being a valid 'cspec' property in the messages there's a discrepancy in message contents and CSPEC data: * Message Gene: MT-ND4 CSPEC Genes: [] * Message MONDOs: MONDO:0044970 CSPEC MONDO: []
  • No CSPEC computed assertion could be determined for this classification!


Variant: NC_012920.1(MT-ND4):m.11467A>G

CA337099193

522716 (ClinVar)

Gene: MT-ND4
Condition: mitochondrial disease
Inheritance Mode: Mitochondrial inheritance
UUID: e3c1743e-847d-4380-96b4-c578450dc0e1
Approved on: 2025-01-13
Published on: 2025-05-28

HGVS expressions

NC_012920.1:m.11467A>G
J01415.2:m.11467A>G
ENST00000361381.2:c.708A>G

Benign

Met criteria codes 1
BA1
Not Met criteria codes 1
PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Mitochondrial Disease Nuclear and Mitochondrial Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1_mtDNA

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Mitochondrial Diseases VCEP
The m.11467A>G (p.L236L) variant in MT-ND4 was reviewed by the Mitochondrial Disease Nuclear and Mitochondrial Variant Curation Expert Panel on January 13, 2025. This variant has not been reported in the medical literature as causative in affected individuals or families with primary mitochondrial disease to our knowledge. This variant is present at high frequencies in population databases (13% of individuals in MITOMAP, 16% in gnomAD v3.1.2, and 20% in the Helix dataset; BA1). Furthermore, this variant is a marker for European haplogroups U and K, where it is found at >99%, however the presence of this variant in an individual with primary mitochondrial disease outside of haplogroups U and K may warrant further consideration to rule out any detrimental effect of the variant. There are no in silico predictors for this type of variant in mitochondrial DNA. There are no cybrids, single fiber studies, or other functional assays reported on this variant. In summary, this variant meets criteria to be classified as benign for primary mitochondrial disease inherited in a mitochondrial manner. This classification was approved by the NICHD/NINDS U24 ClinGen Mitochondrial Disease Variant Curation Expert Panel on January 13, 2025. Mitochondrial DNA-specific ACMG/AMP criteria applied (PMID: 32906214): BA1.
Met criteria codes
BA1
m.11467A>G is a common variant present in Mitomap at 13%, Helix at 20%, and gnomAD at 16%. It is a marker for European haplogroups U and K, where it is found at >99%.
Not Met criteria codes
PS4
There are no published case reports of primary mitochondrial disease patients with m.11467A>G as a potentially causal variant.
Curation History
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