The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_001085049.3(MRAS):c.67G>C (p.Gly23Arg)

CA354671566

560681 (ClinVar)

Gene: MRAS
Condition: RASopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: 919d8b89-9e5e-4ee9-9ac3-56980fc46ae0
Approved on: 2024-09-17
Published on: 2024-10-01

HGVS expressions

NM_001085049.3:c.67G>C
NM_001085049.3(MRAS):c.67G>C (p.Gly23Arg)
NC_000003.12:g.138372950G>C
CM000665.2:g.138372950G>C
NC_000003.11:g.138091792G>C
CM000665.1:g.138091792G>C
NC_000003.10:g.139574482G>C
ENST00000423968.7:c.67G>C
ENST00000289104.8:c.67G>C
ENST00000423968.6:c.67G>C
ENST00000464896.5:c.-36+23918G>C
ENST00000474559.1:c.67G>C
ENST00000475711.5:c.67G>C
ENST00000494949.5:c.-36+24183G>C
ENST00000614350.4:c.-35-24374G>C
ENST00000621127.4:c.-36+24183G>C
NM_001085049.2:c.67G>C
NM_001252090.1:c.67G>C
NM_001252091.1:c.-35-24374G>C
NM_001252092.1:c.-36+23918G>C
NM_001252093.1:c.-36+24183G>C
NM_012219.4:c.67G>C
NM_001252090.2:c.67G>C
NM_001252092.2:c.-36+23918G>C
NM_001252093.2:c.-36+24183G>C
More

Likely Pathogenic

Met criteria codes 7
PS2 PP3 PM5 PM1 PS3_Supporting PS4_Supporting PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen RASopathy Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for MRAS Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.67G>C (p.Gly23Arg) variant in MRAS is a missense variant predicted to cause substitution of glycine by arginine at amino acid 23. This variant is absent from gnomAD v4 (PM2_Supporting). The computational predictor REVEL gives a score of 0.906, which is above the threshold of 0.7, evidence that correlates with impact to MRAS function (PP3). A different missense variant, c.68G>T (p.Gly23Val) PMID:28289718, ClinVar ID:635781, in the same codon has been classified as likely pathogenic for RASopathy by the ClinGen RASopathy VCEP (PM5). This variant resides within the P-loop (amino acids 20 – 27) of MRAS that is defined as a critical functional domain by the ClinGen RASopathy VCEP (PM1). ERK and AKT activation assays in HEK 293T cells showed constitutively active forms of MRAS indicating that this variant impacts protein function (PMID:31108500) (PS3_Supporting). This variant has been reported in 1 proband with features of RASopathy (PS4_Supporting; PMID:31108500). This variant has been identified as a de novo occurrence with confirmed parental relationships in 1 individual with features of RASopathy (PS2; PMID:31108500). Given the Moderate strength of gene-disease relationship between MRAS and autosomal dominant RASopathy, ClinGen’s sequence variant interpretation working group does not recommend the classification of variants in this gene beyond likely pathogenic. Based on ACMG/AMP criteria, this variant has enough supporting evidence to be classified as pathogenic; however, the RASopathy VCEP has downgraded this classification to likely pathogenic based on ClinGen policy. In summary, this variant currently meets the criteria to be classified as likely pathogenic for autosomal dominant RASopathy based on the ACMG/AMP criteria applied, as specified by the ClinGen RASopathy VCEP: PS2, PM1, PM5, PS3_P, PS4, P, PM2_P, PP3. (RASopathy VCEP specifications version 1.1; 9/17/2024)
Met criteria codes
PS2
This variant has been identified as a de novo occurrence with confirmed parental relationships in 1 individual with features of RASopathy (PMID:31108500)
PP3
REVEL score of 0.906
PM5
A different missense variant, c.68G>T (p.Gly23Val) PMID:28289718, ClinVar ID:635781, in the same codon has been classified as likely pathogenic for RASopathy by the ClinGen RASopathy VCEP
PM1
This variant resides within the P-loop (amino acids 20 – 27) of MRAS that is defined as a critical functional domain by the ClinGen RASopathy VCEP
PS3_Supporting
ERK and AKT activation assays in HEK 293T cells showed constitutively active forms of MRAS indicating that this variant impacts protein function (PMID:31108500)
PS4_Supporting
This variant has been reported in 1 proband with features of RASopathy (PS4_Supporting; PMID:31108500)
PM2_Supporting
This variant is absent from gnomAD v4
Curation History
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