The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_001085049.3(MRAS):c.68G>T (p.Gly23Val)

CA354671596

635781 (ClinVar)

Gene: MRAS
Condition: RASopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: 77d4a73f-a6d5-4abb-bbb0-4c042921b3c5
Approved on: 2024-09-17
Published on: 2024-10-01

HGVS expressions

NM_001085049.3:c.68G>T
NM_001085049.3(MRAS):c.68G>T (p.Gly23Val)
NC_000003.12:g.138372951G>T
CM000665.2:g.138372951G>T
NC_000003.11:g.138091793G>T
CM000665.1:g.138091793G>T
NC_000003.10:g.139574483G>T
ENST00000423968.7:c.68G>T
ENST00000289104.8:c.68G>T
ENST00000423968.6:c.68G>T
ENST00000464896.5:c.-36+23919G>T
ENST00000474559.1:c.68G>T
ENST00000475711.5:c.68G>T
ENST00000494949.5:c.-36+24184G>T
ENST00000614350.4:c.-35-24373G>T
ENST00000621127.4:c.-36+24184G>T
NM_001085049.2:c.68G>T
NM_001252090.1:c.68G>T
NM_001252091.1:c.-35-24373G>T
NM_001252092.1:c.-36+23919G>T
NM_001252093.1:c.-36+24184G>T
NM_012219.4:c.68G>T
NM_001252090.2:c.68G>T
NM_001252092.2:c.-36+23919G>T
NM_001252093.2:c.-36+24184G>T
More

Likely Pathogenic

Met criteria codes 6
PM1 PS3_Moderate PM2_Supporting PS2 PS4_Supporting PP3

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen RASopathy Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for MRAS Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.68G>T (p.Gly23Val) variant in MRAS is a missense variant predicted to cause substitution of glycine by valine at amino acid 23. This variant has a minor allele frequency of 0.00008624% (1/1159522) in the European (non-Finnish) population in gnomAD v4 (PM2_Supporting). The computational predictor REVEL gives a score of 0.923, which is above the threshold of 0.7, evidence that correlates with impact to MRAS function (PP3). This variant resides within the P-loop (amino acids 20 – 27) of MRAS that is defined as a critical functional domain by the ClinGen RASopathy VCEP (PM1). This variant has been identified in 1 individual with features of RASopathy (PS4_Supporting; PMID:28289718). This variant has been identified as a de novo occurrence with confirmed parental relationships in 1 individual with features of RASopathy (PS2; PMID:28289718). RAS and ERK activation assays in HEK293T/17 showed constitutively active forms of MRAS indicating that this variant impacts protein function (PMID:28289718) (PS3_Moderate). Given the Moderate strength of gene-disease relationship between MRAS and autosomal dominant RASopathy, ClinGen’s sequence variant interpretation working group does not recommend the classification of variants in this gene beyond likely pathogenic. Based on ACMG/AMP criteria alone, this variant has enough supporting evidence to be classified as pathogenic; however, the RASopathy VCEP has downgraded this classification to likely pathogenic based on ClinGen policy. In summary, this variant currently meets the criteria to be classified as likely pathogenic for autosomal dominant RASopathy based on the ACMG/AMP criteria applied, as specified by the ClinGen RASopathy VCEP: PS2, PS3_M, PM1, PS4_P, PM2_P, PP3. (RASopathy VCEP specifications version 1.1; 9/17/2024)
Met criteria codes
PM1
This variant resides within the P-loop (amino acids 20 – 27), of MRAS that is defined as a critical functional domain by the ClinGen RASopathy VCEP (PM1).
PS3_Moderate
RAS and ERK activation assays in HEK293T/17 showed constitutively active forms of MRAS indicating that this variant impacts protein function (PMID:28289718)

PM2_Supporting
This variant has a minor allele frequency of 0.00008624% (1/1159522) in the European (non-Finnish) population in gnomAD v4 (PM2_Supporting).
PS2
This variant has been identified as a de novo occurrence with confirmed parental relationships in 1 individual with features of RASopathy (PMID:28289718)
PS4_Supporting
This variant has been reported in 1 proband with RASopathy (PS4_Supporting; PMID:28289718).
PP3
The computational predictor REVEL gives a score of 0.923, >0.7, (PP3).
Curation History
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