The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

CA405667995

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: faf3f9ec-a8ff-4fbc-938a-0937f9171fc6

HGVS expressions

NM_001042723.2:c.12295G>C
NC_000019.10:g.38561140G>C
CM000681.2:g.38561140G>C
NC_000019.9:g.39051780G>C
CM000681.1:g.39051780G>C
NC_000019.8:g.43743620G>C
NG_008866.1:g.132441G>C
ENST00000355481.8:c.12295G>C
ENST00000359596.7:n.12310G>C
ENST00000360985.7:c.12292G>C
NM_000540.2:c.12310G>C
NM_001042723.1:c.12295G>C
NM_000540.3:c.12310G>C

Likely Benign

Met criteria codes 2
BP4 BS2_Supporting
Not Met criteria codes 7
BA1 BS1 PS4 PS1 PP3 PM1 PM5

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glycine with arginine at codon 4104 of the RYR1 protein, p.(Gly4104Arg). This variant was not present in a large population database (gnomAD). This variant has been reported in an individual who had a personal or family history of a malignant hyperthermia reaction, however, the caffeine halothane contracture test (CHCT) results for this individual were positive for halothane but not caffeine, PS4 was not implemented (PMID:21455645). This individual had a relative with a negative CHCT test that shared the variant, BS2_Moderate (PMID:21455645). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS (PMID: 21118704). A REVEL score <0.5 supports a benign status, BP4. This variant has been classified as Likely Benign. Criteria implemented: BS2_Moderate, BP4.
Met criteria codes
BP4
REVEL 0.307
BS2_Supporting
Identified in one relative that was MHN, use as BS2_Moderate (PMID:21455645).
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS4
This variant has been reported in an individual who had a personal or family history of a malignant hyperthermia reaction, however, the caffeine halothane contracture test (CHCT) results for this individual were positive for halothane but not caffeine, PS4 was not implemented (PMID:21455645).
PS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM5
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Approved on: 2021-03-18
Published on: 2021-03-31
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