The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • ClinVar Id was derived from the Allele Registry.
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  • See Evidence submitted by expert panel for details.

Variant: NM_001042723.2:c.178G>T

CA405673698

1214005 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 96bae869-7804-4bda-87d9-a22da4c0f0fc
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_001042723.2:c.178G>T
NC_000019.10:g.38442361G>T
CM000681.2:g.38442361G>T
NC_000019.9:g.38933001G>T
CM000681.1:g.38933001G>T
NC_000019.8:g.43624841G>T
NG_008866.1:g.13662G>T
ENST00000599547.6:n.178G>T
ENST00000359596.8:c.178G>T
ENST00000355481.8:c.178G>T
ENST00000359596.7:n.178G>T
ENST00000360985.7:c.178G>T
NM_000540.2:c.178G>T
NM_001042723.1:c.178G>T
NM_000540.3:c.178G>T
NM_000540.3(RYR1):c.178G>T (p.Asp60Tyr)
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Uncertain Significance

Met criteria codes 3
PP3_Moderate PM1 PS4_Supporting
Not Met criteria codes 3
BA1 BS1 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of aspartic acid with tyrosine at codon 60 of the RYR1 protein p.(Asp60Tyr). This variant was not present in a large population database (gnomAD). This variant has been reported in an individual with a personal history of an MH episode and a positive in vitro contracture test (IVCT) result, PS4_Supporting (PMID:24433488). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1. A REVEL score >0.85 (0.961) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Supporting, PM1, PP3_Moderate.
Met criteria codes
PP3_Moderate
REVEL >0.85
PM1
In N-terminal hotspot
PS4_Supporting
One individual identified in the literature, CGS 30, IVCT+ (PMID:24433488)
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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