The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computer assertion could be determined for this classification!


Variant: NM_175914.5(HNF4A):c.968del (p.Gln323fs)

CA658658873

447513 (ClinVar)

Gene: HNF4A
Condition: monogenic diabetes
Inheritance Mode: Autosomal dominant inheritance
UUID: d5a6a1d2-290c-4bb4-9a41-deb10b0590ff
Approved on: 2024-04-07
Published on: 2024-04-07

HGVS expressions

NM_175914.5:c.968del
NM_175914.5(HNF4A):c.968del (p.Gln323fs)
NC_000020.11:g.44424159del
CM000682.2:g.44424159del
NC_000020.10:g.43052799del
CM000682.1:g.43052799del
NC_000020.9:g.42486213del
NG_009818.1:g.73359del
ENST00000316673.9:c.968del
ENST00000316099.10:c.1034del
ENST00000619550.5:c.1008del
ENST00000316099.9:c.1034del
ENST00000316099.8:c.1034del
ENST00000316673.8:c.968del
ENST00000372920.1:c.*801del
ENST00000415691.2:c.1034del
ENST00000443598.6:c.1034del
ENST00000457232.5:c.968del
ENST00000609795.5:c.968del
ENST00000619550.4:c.959del
NM_000457.4:c.1034del
NM_001030003.2:c.968del
NM_001030004.2:c.968del
NM_001258355.1:c.1013del
NM_001287182.1:c.959del
NM_001287183.1:c.959del
NM_001287184.1:c.959del
NM_175914.4:c.968del
NM_178849.2:c.1034del
NM_178850.2:c.1034del
NM_001030003.3:c.968del
NM_001030004.3:c.968del
NM_001258355.2:c.1013del
NM_001287182.2:c.959del
NM_001287184.2:c.959del
NM_178849.3:c.1034del
NM_178850.3:c.1034del
NM_000457.5:c.1034del
NM_000457.6:c.1034del
NM_001287183.2:c.959del
More

Pathogenic

Met criteria codes 3
PP4_Moderate PVS1 PM2_Supporting
Not Met criteria codes 2
BA1 BS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for HNF4A Version 2.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.968del variant in the hepatocyte nuclear factor 4-alpha gene, HNF4A, causes a frameshift in the protein at codon 323 in NM_175914.5, adding 7 novel amino acids before encountering a stop codon (p.(Gln323Argfs*7)). This variant, located in biologically-relevant exon 8 of 10, is predicted to lead to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID: 23348805). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). This variant was identified in an individual with a clinical history highly specific for HNF4A-monogenic diabetes (MODY probability calculator result >50%, negative genetic testing for HNF1A, and negative antibodies) (PP4_Moderate; internal lab contributors). In summary, c.968del meets the criteria to be classified as Pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 2.0.0 approved 10/11/2023): PVS1, PP4_Moderate, PM2_Supporting.
Met criteria codes
PP4_Moderate
This variant was identified in an individual with a clinical history highly specific for HNF4A-monogenic diabetes (MODY probability calculator result >50%, negative genetic testing for HNF1A, and negative antibodies) (PP4_Moderate; internal lab contributors).
PVS1
This variant, located in biologically-relevant exon 8 of 10, is predicted to lead to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID: 23348805).
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.