The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene label mismatch: ACADVL vs undefined
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC related information was provided by the message!
  • No CSPEC computed assertion could be determined for this classification!

  • See Evidence submitted by expert panel for details.

Variant: NM_000018.4(ACADVL):c.1076C>T (p.Ala359Val)

CA8337933

541725 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: 5d267f11-b169-4fdd-9357-14993db47e65
Approved on: 2025-04-22
Published on: 2025-05-06

HGVS expressions

NM_000018.4:c.1076C>T
NM_000018.4(ACADVL):c.1076C>T (p.Ala359Val)
NC_000017.11:g.7222864C>T
CM000679.2:g.7222864C>T
NC_000017.10:g.7126183C>T
CM000679.1:g.7126183C>T
NC_000017.9:g.7066907C>T
NG_007975.1:g.8031C>T
NG_008391.2:g.2187G>A
ENST00000356839.10:c.1076C>T
ENST00000322910.9:c.*1031C>T
ENST00000350303.9:c.1010C>T
ENST00000356839.9:c.1076C>T
ENST00000543245.6:c.1145C>T
ENST00000578824.5:n.225C>T
ENST00000582379.1:n.460C>T
ENST00000583858.5:c.105C>T
ENST00000585203.6:n.17C>T
NM_000018.3:c.1076C>T
NM_001033859.2:c.1010C>T
NM_001270447.1:c.1145C>T
NM_001270448.1:c.848C>T
NM_001033859.3:c.1010C>T
NM_001270447.2:c.1145C>T
NM_001270448.2:c.848C>T
More

Uncertain Significance

Met criteria codes 4
PP4 PP3 PM3 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4(ACADVL): c.1076C>T (p.Ala359Val) variant in ACADVL is a missense variant predicted to cause substitution of alanine by valine at amino acid 359 (p.Ala359Val). The highest population minor allele frequency in gnomAD v2.1.1 is 0.00008 in African/African American population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). This variant is reported in the literature in an individual apparently affected with very long-chain acyl-CoA dehydrogenase deficiency, displaying elevated C14:1 carnitine level (1.65 µmol/L) during newborn screening, which is highly specific for VLCAD deficiency (PP4_Supporting, PMID: 27209629). This patient also carried a pathogenic variant c.848T>C (p.V283A) in compound heterozygous fashion (in trans, PM3 score = 1.0, PM3, PMID: 27209629). In addition, this variant has been reported in the literature in 6 patients with an abnormal newborn screen who are apparently heterozygous carriers for the variant (PMIDs: 26385305, 29111448), but this information is insufficient to use toward classification. The computational predictor REVEL gives a score of 0.76, which is above the threshold of 0.75, evidence that correlates with impact to ACADVL function (PP3). Due to limited evidence, this variant is classified as a variant of uncertain significance for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PP3, PM3, PM2_Supporting, PP4_Supporting (ACADVL VCEP specifications version 1; approved November 9, 2021).
Met criteria codes
PP4
This variant is reported in the literature in an individual apparently affected with very long-chain acyl-CoA dehydrogenase deficiency, displaying elevated C14:1 carnitine level (1.65 µmol/L) during newborn screening, which is highly specific for VLCAD deficiency (PP4_Supporting, PMID: 27209629).
PP3
REVEL 0.76
PM3
In trans with a known pathogenic variant
PM2_Supporting
The highest population minor allele frequency in gnomAD v2.1.1 is 0.00008 in African/African American population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.