The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC related information was provided by the message!
  • No CSPEC computed assertion could be determined for this classification!

  • No Criteria Specification was provided in the publication event for the variant classifaction.
  • The Criteria Specification shown below is a best-estimate based on the VCEP, gene, disease, and publication date.

Variant: NM_000138.5(FBN1):c.3554G>A (p.Gly1185Asp)

CA392324992

549173 (ClinVar)

Gene: FBN1 (HGNC:2200)
Condition: Marfan syndrome (MONDO:0007947)
Inheritance Mode: Autosomal dominant inheritance
UUID: a105dcc4-2e3f-4c8c-9afc-9b908c27ed46
Approved on: 2024-05-23
Published on: 2024-10-31

HGVS expressions

NM_000138.5(FBN1):c.3554G>A (p.Gly1185Asp)
NM_000138.5:c.3554G>A
NC_000015.10:g.48487110C>T
CM000677.2:g.48487110C>T
NC_000015.9:g.48779307C>T
CM000677.1:g.48779307C>T
NC_000015.8:g.46566599C>T
NG_008805.2:g.163679G>A
ENST00000559133.6:c.3554G>A
ENST00000674301.2:c.3554G>A
ENST00000684448.1:n.2228G>A
ENST00000316623.10:c.3554G>A
ENST00000316623.9:c.3554G>A
ENST00000537463.6:c.637-12460G>A
NM_000138.4:c.3554G>A
More

Likely Pathogenic

Met criteria codes 6
PS4_Supporting PP3 PP2 PP4 PM2_Supporting PM6
Not Met criteria codes 1
PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.3554G>A is a missense variant in FBN1 predicted to cause a substitution of a glycine by aspartic acid at amino acid 1185 (p.Gly1185Asp), in a cbEGF-like domain of the protein. This variant was found in a proband who met revised Ghent criteria with a clinical diagnosis of Marfan syndrome (MFS) (PMID 35058154, internal lab data, PP4). This variant has been reported three times in ClinVar: once as pathogenic, once as likely pathogenic, and once as uncertain significance (Variation ID: 549173). This variant was also found to be de novo in a proband with infantile MFS without confirmation of paternity and maternity (PM6, PS4_Sup; internal lab data). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.942, PP3). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PM6, PS4_Sup, PM2_Sup, PP2, PP3, PP4.
Met criteria codes
PS4_Supporting
1 point- Internal Bichat proband- 1yo proband with infantile form of MFS
PP3
REVEL score: 0.942
PP2
Missense variant
PP4
Internal patient- met revised Ghent criteria
PM2_Supporting
Absent in gnomAD
PM6
1yo proband with infantile form of MFS, de novo without confirmation of paternity/maternity
Not Met criteria codes
PM1
Non-critical Gly in cbEGF-like domain
Curation History
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