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  • See Evidence submitted by expert panel for details.

Variant: NM_000540.2(RYR1):c.12398A>G (p.Glu4133Gly)

CA058826

654427 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: a44cfe6c-ef76-446d-a02b-a1a8d750e63a
Approved on: 2021-05-31
Published on: 2021-05-31

HGVS expressions

NM_000540.2:c.12398A>G
NM_000540.2(RYR1):c.12398A>G (p.Glu4133Gly)
NC_000019.10:g.38561228A>G
CM000681.2:g.38561228A>G
NC_000019.9:g.39051868A>G
CM000681.1:g.39051868A>G
NC_000019.8:g.43743708A>G
NG_008866.1:g.132529A>G
ENST00000688602.1:c.808A>G
ENST00000689936.1:c.790A>G
ENST00000359596.8:c.12398A>G
ENST00000355481.8:c.12383A>G
ENST00000359596.7:c.12398A>G
ENST00000360985.7:c.12380A>G
ENST00000594335.5:c.5767A>G
NM_001042723.1:c.12383A>G
NM_000540.3:c.12398A>G
NM_001042723.2:c.12383A>G
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Uncertain Significance

Met criteria codes 2
PP3 PS4_Supporting
Not Met criteria codes 1
PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glutamic acid with glycine at codon 4133 of the RYR1 protein, p.(Glu4133Gly). The maximum allele frequency for this variant among the six major gnomAD populations is SAS: 0.0000649, a frequency consistent with pathogenicity for MHS. This variant has been identified in an individual reported to have undergone an MH episode (CGS 10), the individual had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 24433488). The MAF in the SAS population in gnomAD is 0.000065, assuming ~3,000 MH cases described in the literature an odds ratio calculation would allow for PS4_Supporting. No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score >0.85 (0.881) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PP3_Moderate.
Met criteria codes
PP3
A REVEL score >0.85 (0.881) supports a pathogenic status for this variant, PP3_Moderate.
PS4_Supporting
This variant has been identified in an individual reported to have undergone an MH episode (CGS 10), the individual had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 24433488). The MAF in the SAS population in gnomAD is 0.000065, assuming ~3,000 MH cases described in the literature an odds ratio calculation would allow for PS4_Supporting.
Not Met criteria codes
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
Curation History
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