The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene label mismatch: BRCA2 vs undefined
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000059.4(BRCA2):c.67G>A (p.Asp23Asn)

CA10576059

225732 (ClinVar)

Gene: BRCA2 (HGNC:675)
Condition: BRCA2-related cancer predisposition (MONDO:0700269)
Inheritance Mode: Autosomal dominant inheritance
UUID: acb51610-4f1c-44e1-a593-129bd48b0e1e
Approved on: 2026-01-05
Published on: 2026-01-05

HGVS expressions

NM_000059.4:c.67G>A
NM_000059.4(BRCA2):c.67G>A (p.Asp23Asn)
NC_000013.11:g.32316527G>A
CM000675.2:g.32316527G>A
NC_000013.10:g.32890664G>A
CM000675.1:g.32890664G>A
NC_000013.9:g.31788664G>A
NG_012772.3:g.6048G>A
NG_017006.1:g.428C>T
NG_017006.2:g.3837C>T
ENST00000470094.2:c.67G>A
ENST00000528762.2:c.67G>A
ENST00000530893.7:c.-303+4G>A
ENST00000665585.2:c.67G>A
ENST00000666593.2:c.67G>A
ENST00000700202.2:c.67G>A
ENST00000700199.1:n.191G>A
ENST00000700200.1:n.191G>A
ENST00000700201.1:c.67G>A
ENST00000380152.8:c.67G>A
ENST00000544455.6:c.67G>A
ENST00000614259.2:c.67G>A
ENST00000680887.1:c.67G>A
ENST00000380152.7:c.67G>A
ENST00000530893.6:n.265+4G>A
ENST00000544455.5:c.67G>A
ENST00000614259.1:n.67G>A
NM_000059.3:c.67G>A
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Uncertain Significance

Met criteria codes 2
PVS1_Strong PM2_Supporting
Not Met criteria codes 1
PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen ENIGMA BRCA1 and BRCA2 Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for BRCA2 Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
ENIGMA BRCA1 and BRCA2 VCEP
The c.67G>A variant in BRCA2 is a missense variant predicted to cause substitution of Aspartic Acid by Asparagine at amino acid 23 (p.(Asp23Asn)). This variant is absent from gnomAD v2.1 (exomes only, non-cancer subset, read depth ≥25) and gnomAD v3.1 (non-cancer subset, read depth ≥25) (PM2_Supporting met). This BRCA2 missense variant has a SpliceAI score of 0.59, predicting an impact on splicing (score threshold >0.20) (PP3 not applied because a PVS1 code is met). This variant is reported to result in aberrant mRNA splicing. RT-PCR demonstrated that the variant impacts splicing by use of a cryptic site 4 nt upstream (PMID: 29750258). The percent reference and aberrant transcripts produced from the variant allele is not stated. A minigene assay demonstrated the variant allele produced 7.7 % reference (full-length, FL) and 89 % aberrant transcript using an allele specific quantitative assessment with Capillary electrophoresis (PMID: 30883759). RT-PCRseq from an Internal lab contributor has also demonstrated that a small number of normally spliced reads contained the variant allele (Ambry internal data). Appropriate code strength determined by comparison of results to PVS1 decision tree and VCEP discussion: PVS1_Strong (RNA). In summary, this variant meets the criteria to be classified as a Variant of uncertain significance for BRCA2-related cancer predisposition based on the ACMG/AMP criteria applied as specified by the ENIGMA BRCA1/2 VCEP (PM2_Supporting, PVS1_Strong (RNA)).
Met criteria codes
PVS1_Strong
This variant is reported to result in aberrant mRNA splicing. RT-PCR demonstrated that the variant impacts splicing by use of a cryptic site 4 nt upstream (PMID: 29750258). The percent reference and aberrant transcripts produced from the variant allele is not stated. A minigene assay demonstrated the variant allele produced 7.7 % reference (full-length, FL) and 89 % aberrant transcript using an allele specific quantitative assessment with Capillary electrophoresis (PMID: 30883759). RT-PCRseq from an Internal lab contributor has also demonstrated that a small number of normally spliced reads contained the variant allele (Ambry internal data). Appropriate code strength determined by comparison of results to PVS1 decision tree and VCEP discussion: PVS1_Strong (RNA).
PM2_Supporting
This variant is absent from gnomAD v2.1 (exomes only, non-cancer subset, read depth ≥25) and gnomAD v3.1 (non-cancer subset, read depth ≥25) (PM2_Supporting met).
Not Met criteria codes
PP3
This BRCA2 missense variant has a SpliceAI score of 0.59, predicting an impact on splicing (score threshold >0.20) (PP3 not applied because a PVS1 code is met).
Curation History
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