The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_000552.5(VWF):c.4010C>T (p.Pro1337Leu)

CA228510

100314 (ClinVar)

Gene: VWF (HGNC:7450)
Condition: von Willebrand disease type 2B (MONDO:0015629)
Inheritance Mode: Autosomal dominant inheritance
UUID: d3b39318-cc9e-47d1-9ea2-e7bf53737618
Approved on: 2025-10-07
Published on: 2025-10-10

HGVS expressions

NM_000552.5:c.4010C>T
NM_000552.5(VWF):c.4010C>T (p.Pro1337Leu)
NC_000012.12:g.6019408G>A
CM000674.2:g.6019408G>A
NC_000012.11:g.6128574G>A
CM000674.1:g.6128574G>A
NC_000012.10:g.5998835G>A
NG_009072.1:g.110263C>T
NG_009072.2:g.110263C>T
ENST00000261405.10:c.4010C>T
ENST00000261405.9:c.4010C>T
ENST00000538635.5:n.421-25474C>T
NM_000552.3:c.4010C>T
NM_000552.4:c.4010C>T
More

Likely Pathogenic

Met criteria codes 4
PM2_Supporting PS4_Supporting PS3 PP4
Not Met criteria codes 1
PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen von Willebrand Disease Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for VWF Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
von Willebrand Disease VCEP
The NM_000552.5:c.4010C>T variant in VWF is a missense variant predicted to cause substitution of proline by leucine at amino acid 1377 (p.Pro1377Leu). At least 1 patient with this variant displayed excessive mucocutaneous bleeding as well as a laboratory phenotype of enhanced RIPA and loss of HMWM, which is specific for VWD type 2B. (PP4, PMID 1373334). This variant has been reported in 1 additional proband meeting VWD 2B PP4 laboratory phenotype of enhanced RIPA (PS4_Supporting; Gold Variant Database). The Grpmax filtering allele frequency in gnomAD v4.1 is 0.00000183 (based on 6/1179864 alleles in the European non-Finnish population), which is lower than the ClinGen VWD VCEP threshold of <0.0001 for type 2B (PM2_Supporting). Platelet binding assay performed with the p.Pro1377Leu recombinant mutant vWF expressed by COS-7 showed increased binding at low doses of ristocetin, indicating that this variant has a gain of function effect on the protein (PMID 1373334)(PS3_supporting). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal dominant von Willebrand disease type 2B based on the ACMG/AMP criteria applied, as specified by the ClinGen VWD VCEP: PP4, PS4_Supporting, PM2_Supporting, PS3 (ClinGen von Willebrand Disease Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for VWF Version 1.0.0)
Met criteria codes
PM2_Supporting
The Grpmax filtering allele frequency in gnomAD v4.1 is 0.00000183 (based on 6/1179864 alleles in the European non-Finnish population), which is lower than the ClinGen VWD VCEP threshold of <0.0001 for type 2B (PM2_Supporting).
PS4_Supporting
This variant has been reported in 1 additional proband meeting VWD 2B PP4 laboratory phenotype of enhanced RIPA (PS4_Supporting; Gold Variant Database).
PS3
Platelet binding assay performed with the p.Pro1377Leu recombinant mutant vWF expressed by COS-7 showed increased binding at low doses of ristocetin, indicating that this variant has a gain of function effect on the protein (PMID 1373334)(PS3_supporting).
PP4
At least 1 patient with this variant displayed excessive mucocutaneous bleeding as well as a laboratory phenotype of enhanced RIPA and loss of HMWM, which is specific for VWD type 2B. (PP4, PMID 1373334).
Not Met criteria codes
PP3
The computational predictor REVEL gives a score of 0.581, which is below the ClinGen VWD VCEP PP3 threshold of >0.644 and does not predict a damaging effect on VWF function.
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
ClinGen Terms of Use.
¤ Powered by BCM's Genboree.