The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_033508.3:c.761C>G

CA367400605

Gene: GCK (HGNC:2645)
Condition: monogenic diabetes (MONDO:0015967)
Inheritance Mode: Semidominant inheritance
UUID: e6a29588-16e6-42c6-b56d-d56b775bb409
Approved on: 2025-11-24
Published on: 2025-11-26

HGVS expressions

NM_033508.3:c.761C>G
NC_000007.14:g.44147749G>C
CM000669.2:g.44147749G>C
NC_000007.13:g.44187348G>C
CM000669.1:g.44187348G>C
NC_000007.12:g.44153873G>C
NG_008847.1:g.46675C>G
NG_008847.2:g.55422C>G
ENST00000395796.8:c.*762C>G
ENST00000616242.5:c.764C>G
ENST00000345378.7:c.767C>G
ENST00000403799.8:c.764C>G
ENST00000671824.1:c.764C>G
ENST00000673284.1:c.764C>G
ENST00000345378.6:c.767C>G
ENST00000395796.7:c.761C>G
ENST00000403799.7:c.764C>G
ENST00000437084.1:c.713C>G
ENST00000616242.4:c.761C>G
NM_000162.3:c.764C>G
NM_033507.1:c.767C>G
NM_033508.1:c.761C>G
NM_000162.4:c.764C>G
NM_001354800.1:c.764C>G
NM_033507.2:c.767C>G
NM_033508.2:c.761C>G
NM_000162.5:c.764C>G
NM_033507.3:c.767C>G
More

Pathogenic

Met criteria codes 7
PP3 PP2 PM2 PM1 PS4_Moderate PP4_Moderate PP1_Strong

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GCK Version 3.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.764C>G variant in the glucokinase gene, GCK, causes an amino acid change of threonine to serine at codon 255 (p.(Thr255Ser)) of transcript NM_000162.5. This variant resides in an amino acid that directly binds glucose, which is defined as critical for the protein’s function by the ClinGen MDEP (PM1). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). This variant segregated with hyperglycemia, with six informative meioses in four families (PP1_Strong; Internal lab contributors). This variant was identified in multiple individuals with a clinical history highly specific for GCK-hyperglycemia (fasting glucose 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and negative antibodies) (PP4_Moderate; internal lab contributors). This variant was identified in five unrelated individuals with hyperglycemia (PS4_Moderate; PMID 24808978, internal lab contributors). GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease (PP2). This variant is predicted to be deleterious by computational evidence, with a REVEL score of 0.714, which is greater than the MDEP VCEP threshold of 0.70 (PP3). In summary, c.764C>G meets the criteria to be classified as pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 3.1.0, approved 10/10/2025): PM1, PM2_Supporting, PP2, PP3, PP4_Moderate, PS4_Moderate, PP1_Strong
Met criteria codes
PP3
This variant is predicted to be deleterious by computational evidence, with a REVEL score of 0.714, which is greater than the MDEP VCEP threshold of 0.70 (PP3).
PP2
GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease (PP2).
PM2
This variant is absent from gnomAD v2.1.1 and v4.1 (PM2_Supporting).
PM1
This variant resides in an amino acid that directly binds glucose, which is defined as critical for the protein’s function by the ClinGen MDEP (PM1).
PS4_Moderate
This variant was identified in five unrelated individuals with hyperglycemia (PS4_Moderate; PMID: 24808978, internal lab contributors).
PP4_Moderate
This variant was identified in multiple individuals with a clinical history highly specific for GCK-hyperglycemia (fasting glucose 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and negative antibodies) (PP4_Moderate; Internal lab contributors)
PP1_Strong
This variant segregated with hyperglycemia, with six informative meioses in four families (PP1_Strong; PMID: 24804978; internal lab contributors).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
ClinGen Terms of Use.
¤ Powered by BCM's Genboree.