The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000407.5:c.89G>A

CA410676362

Gene: GP1BB (HGNC:2812)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: ed97a76c-9ca5-415e-802b-2c766926b351
Approved on: 2026-04-02
Published on: 2026-04-02

HGVS expressions

NM_000407.5:c.89G>A
NC_000022.11:g.19723932G>A
CM000684.2:g.19723932G>A
NC_000022.10:g.19711455G>A
CM000684.1:g.19711455G>A
NC_000022.9:g.18091455G>A
NG_007974.1:g.5390G>A
ENST00000366425.4:c.89G>A
ENST00000366425.3:c.89G>A
ENST00000431044.5:c.*1174G>A
ENST00000455843.5:c.*1174G>A
ENST00000470814.1:n.2061G>A
NM_000407.4:c.89G>A
NR_037611.1:n.3829G>A
NR_037612.1:n.2333G>A
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Likely Pathogenic

Met criteria codes 6
PM2_Supporting PS3_Supporting PM3_Supporting PP3_Moderate PP1 PP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP1BB Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.89G>A (p.Cys30Tyr) variant in GP1BB is a missense variant predicted to cause substitution of Cysteine by Tyrosine at amino acid 30 (p.Cys30Tyr). At least one patient (Proband PMID: 12958615) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP1bb measured by Western blot, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4). This individual was homozygous for the variant (0.5 points, PM3_Supporting). The variant has been reported to segregate in the proband plus 1 additional homozygous BSS affected sibling (1 point, PP1). Surface expression of the GPIba measured by flow cytometry in CHO cells transiently co-transfected with p.Cys30Tyr variant GP1b and wild type GP1a and GP9 showed absent expression, indicating that this variant impacts protein function (PMID: 12958615)(PS3_supporting). The computational predictor REVEL gives a score of 0.792, which is above the ClinGen PD VCEP threshold of >0.773 and predicts a damaging effect on GP1BB function (PP3_Moderate). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PP3_Moderate, PP1, PP4, PM2_Supporting, PM3_Supporting and PS3_Supporting (VCEP specifications version 1.1).
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
PS3_Supporting
Surface expression of the GPIba measured by flow cytometry in CHO cells transiently co-transfected with p.Cys30Tyr variant GP1bb and wild type GP1a and GP9 showed absent expression, indicating that this variant impacts protein function (PMID: 12958615)(PS3_supporting).
PM3_Supporting
This variant has been detected in at least 1 proband with Bernard-Soulier syndrome (PMID: 12958615). This individual was homozygous for the variant (0.5 points, PM3_Supporting).
PP3_Moderate
The computational predictor REVEL gives a score of 0.792, which is above the ClinGen PD VCEP threshold of >0.773 and predicts a damaging effect on GP1BB function (PP3_Moderate).
PP1
The variant has been reported to segregate in the proband plus 1 additional homozygous BSS affected sibling (1 point, PP1).
PP4
At least one patient (Proband PMID: 12958615) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP1bb measured by Western blot, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding and macrothrombocytopenia which are consistent with Bernard-Soulier syndrome (PP4).
Curation History
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