The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000174.5(GP9):c.442dup (p.Val148fs)

CA546416976

3588372 (ClinVar)

Gene: GP9 (HGNC:2815)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: f9c5f81c-73bb-4057-bf35-96b12274fe74
Approved on: 2026-01-20
Published on: 2026-01-20

HGVS expressions

NM_000174.5:c.442dup
NM_000174.5(GP9):c.442dup (p.Val148fs)
NC_000003.12:g.129062181dup
CM000665.2:g.129062181dup
NC_000003.11:g.128781024dup
CM000665.1:g.128781024dup
NC_000003.10:g.130263714dup
NG_008715.1:g.6380dup
ENST00000307395.5:c.442dup
ENST00000307395.4:c.442dup
NM_000174.4:c.442dup
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Likely Pathogenic

Met criteria codes 4
PP4 PM3_Supporting PM2_Supporting PVS1_Strong

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP9 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.442dup (p.Val148GlyfsTer67) variant in GP9 is a frameshift variant that may cause a premature stop codon that is predicted to escape nonsense mediated decay, however the truncation includes the functionally important transmembrane domain (alters amino acids 148-169) in a gene where loss-of-function is an established disease mechanism (PVS1_Strong). At least one patient (Patient P13 in PMID: 21173099) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding is consistent with Bernard-Soulier syndrome (PP4). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting). The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.0000003000 (based on 2/1165574 alleles) in the European (non-Finnish) population, which is lower than the ClinGen PD VCEP threshold (<0.0000329; PM2_Supporting). In summary, this variant meets the criteria to be classified as Likely Pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1_Strong, PP4, PM3_Supporting and PM2_Supporting (VCEP specifications version 1).
Met criteria codes
PP4
At least one patient (Patient P13 in PMID: 21173099) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding is consistent with Bernard-Soulier syndrome (PP4).
PM3_Supporting
This variant has been detected in at least 1 proband with Bernard-Soulier syndrome (PMID: 21173099). This individual was homozygous for the variant (0.5 PM3 points, PM3_Supporting).
PM2_Supporting
The Grpmax Filtering allele frequency in gnomAD v4.1.0 is 0.0000003000 (based on 2/1165574 alleles) in the European (non-Finnish) population, which is lower than the ClinGen PD VCEP threshold (<0.0000329; PM2_Supporting).
PVS1_Strong
The c.442dup (p.Val148GlyfsTer67) variant in GP9 is a frameshift variant that may cause a premature stop codon that is predicted to escape nonsense mediated decay, however the truncation includes the functionally important transmembrane domain (alters amino acids 148-169) in a gene where loss-of-function is an established disease mechanism (PVS1_Strong).
Curation History
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