The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000174.5(GP9):c.284A>G (p.Tyr95Cys)

CA354447931

2503896 (ClinVar)

Gene: GP9 (HGNC:2815)
Condition: Bernard-Soulier syndrome (MONDO:0009276)
Inheritance Mode: Autosomal recessive inheritance
UUID: fc85773b-0c29-4638-9eb9-53a16007d383
Approved on: 2026-01-20
Published on: 2026-01-20

HGVS expressions

NM_000174.5:c.284A>G
NM_000174.5(GP9):c.284A>G (p.Tyr95Cys)
NC_000003.12:g.129062023A>G
CM000665.2:g.129062023A>G
NC_000003.11:g.128780866A>G
CM000665.1:g.128780866A>G
NC_000003.10:g.130263556A>G
NG_008715.1:g.6222A>G
ENST00000307395.5:c.284A>G
ENST00000307395.4:c.284A>G
NM_000174.4:c.284A>G
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Likely Pathogenic

Met criteria codes 4
PM2_Supporting PP3_Moderate PP4 PM3
Not Met criteria codes 1
PM5

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GP9 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
The c.284A>G variant in GP9 is a missense variant predicted to cause substitution of Tyrosine by Cysteine at amino acid 95 (p.Tyr95Cys). At least one patient (Patient P12 in PMID: 21173099) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 as measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding which is consistent with Bernard-Soulier syndrome (PP4). This variant has been detected in at least two probands with Bernard-Soulier syndrome (PMIDs: 21173099, 32202057 and 29043243). Both probands were homozygous for the variant (1 PM3 point, PM3). The computational predictor REVEL gives a score of 0.814, which is above the ClinGen PD VCEP threshold of ≥0.773 and predicts a damaging effect on function (PP3_Moderate). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal recessive Bernard-Soulier syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PP4, PM3, PM2_Supporting and PP3_Moderate (VCEP specifications version 1).
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting).
PP3_Moderate
The computational predictor REVEL gives a score of 0.814, which is above the ClinGen PD VCEP threshold of ≥0.773 and predicts a damaging effect on function (PP3_Moderate).
PP4
At least one patient (Patient P12 in PMID: 21173099) with this variant had aggregation absent for ristocetin and present for all other agonists as well as less than 10% expression of GPIba and GP9 as measured by flow cytometry, which is highly specific for Bernard-Soulier syndrome. Additionally, the patient had excessive mucocutaneous bleeding which is consistent with Bernard-Soulier syndrome (PP4).
PM3
This variant has been detected in at least two probands with Bernard-Soulier syndrome (PMIDs: 21173099, 32202057 and 29043243). Both probands were homozygous for the variant (1 PM3 point, PM3).
Not Met criteria codes
PM5
Another missense variant in the same codon has been reported in a patient with Bernard-Soulier syndrome; NM_000174.5(GP9):c.284A>C (p.Tyr95Ser) However, this variant has not yet met the criteria to be classified as pathogenic or likely pathogenic by the ClinGen PD VCEP (PM5 not met).
Curation History
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