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Variant: NM_000257.4(MYH7):c.1477A>G (p.Met493Val)

CA010805

181349 (ClinVar)

Gene: MYH7
Condition: hypertrophic cardiomyopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: 636663ba-5cda-4df6-8737-ecd65e908e18
Approved on: 2022-07-31
Published on: 2022-07-31

HGVS expressions

NM_000257.4:c.1477A>G
NM_000257.4(MYH7):c.1477A>G (p.Met493Val)
NC_000014.9:g.23428601T>C
CM000676.2:g.23428601T>C
NC_000014.8:g.23897810T>C
CM000676.1:g.23897810T>C
NC_000014.7:g.22967650T>C
NG_007884.1:g.12061A>G
ENST00000355349.4:c.1477A>G
ENST00000355349.3:c.1477A>G
NM_000257.3:c.1477A>G
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Uncertain Significance

Met criteria codes 3
PS4_Moderate PM1 PM2_Supporting
Not Met criteria codes 20
PVS1 PS3 BA1 PS2 PS1 PP1 PP3 PM6 PM4 PM5 PM3 BS2 BS4 BS3 BS1 BP3 BP5 BP2 BP7 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
The c.1477A>G (p.Met493Val) variant in MYH7 has been reported in at least 8 individuals with HCM (PS4_Moderate; Meyer 2013 PMID:23816408; Marsiglia 2013 PMID:24093860; Walsh 2017 PMID:27532257; LMM pers. comm.; Ambry pers. comm.; GeneDx pers. comm.). This variant was absent from large population studies (PM2_Supporting; http://gnomad.broadinstitute.org, v2.1.1). Following the ClinGen Sequence Variant Interpretation (SVI) working group recommendation for weight adjustment of the PM2 criterion due to concerns that rarity in the general population may not meet the relative odds of pathogenicity for moderate evidence, the PM2 criterion was downgraded to PM2_Supporting. This variant lies in the head region of the protein (aa 181-937) and missense variants in this region are statistically more likely to be disease-associated (PM1; Walsh 2017 PMID:27532257). Computational prediction tools and conservation analysis do not provide strong support for or against an impact to the protein. In summary, due to insufficient evidence, this variant meets criteria to be classified as uncertain significance for hypertrophic cardiomyopathy in an autosomal dominant manner. MYH7-specific ACMG/AMP criteria applied (Kelly 2018 PMID:29300372): PS4_Moderate; PM2_Supporting; PM1.
Met criteria codes
PS4_Moderate
9 total probands w/ HCM: 1 internal Ambry, 1 OMGL (27532257), 3 GeneDx, 1 LMM, 1 SHaRe (Florence), 1 lit (23816408), 1 lit (marsiglia). (GeneDX int data confirmed by Mitzi Murray 4.17.20
PM1
Hotspot/est. functional domain (amino acids 181-937) without benign variation
PM2_Supporting
Absent from gnomAD
Not Met criteria codes
PVS1
n/a
PS3
no data available
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS2
no data available
PS1
M493I and M493L are present in HGMD and clinvar but are not classifiable as pathogenic.
PP1
no data available
PP3
BayesDel metapredictor scores as deleterious, revel deleterious score, comp tools mixed (align gvgd and polyphen benigh), conserved, sarc polyphen path
PM6
no data available
PM4
n/a
PM5
M493I and M493L are present in HGMD and clinvar but are not classifiable as pathogenic.
PM3
no data available
BS2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS4
no data available
BS3
no data available
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP3
n/a
BP5
no data available
BP2
no data available
BP7
n/a
BP4
BayesDel metapredictor scores as deleterious, revel deleterious score, comp tools mixed (align gvgd and polyphen benigh), conserved, sarc polyphen path
Curation History
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